Literature DB >> 21378828

G-quadruplex self-assembly regulated by Coulombic interactions.

David González-Rodríguez1, Joost L J van Dongen, Martin Lutz, Anthony L Spek, Albertus P H J Schenning, E W Meijer.   

Abstract

Self-assembly offers the possibility to organize molecules in a given architecture through a subtle interplay between different noncovalent interactions. Although the kind of molecular association can often be predicted from information present in the individual molecules, the synthesis of supramolecular assemblies having a perfectly defined size and shape remains challenging. Here, we introduce the use of Coulombic interactions to control the supramolecular synthesis of finite, well-defined nanostructures. In particular, we demonstrate that the energy associated with the separation of ion pairs can regulate very precisely guanosine self-assembly into discrete G-quadruplexes. Assemblies comprising 8, 12, 16 or 24 guanosine molecules can be selectively and quantitatively obtained simply by tuning the stabilization of the dissociated anions in the solvent environment. Thus, factors such as solvent polarity, the nature of the anion and the cation-anion distance are shown to have a decisive role in the growth of G-quadruplexes.

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Year:  2009        PMID: 21378828     DOI: 10.1038/nchem.177

Source DB:  PubMed          Journal:  Nat Chem        ISSN: 1755-4330            Impact factor:   24.427


  24 in total

1.  A G-Quartet Formed in the Absence of a Templating Metal Cation: A New 8-(N,N-dimethylaniline)guanosine Derivative This work was supported by the Robert A. Welch foundation. We thank Dr. Ben Shoulders and the staff at the NMR facility at the University of Texas for their assistance.

Authors: 
Journal:  Angew Chem Int Ed Engl       Date:  2000-04       Impact factor: 15.336

2.  Self-assembly at all scales.

Authors:  George M Whitesides; Bartosz Grzybowski
Journal:  Science       Date:  2002-03-29       Impact factor: 47.728

Review 3.  G-quartets 40 years later: from 5'-GMP to molecular biology and supramolecular chemistry.

Authors:  Jeffery T Davis
Journal:  Angew Chem Int Ed Engl       Date:  2004-01-30       Impact factor: 15.336

4.  Fluorous nanodroplets structurally confined in an organopalladium sphere.

Authors:  Sota Sato; Junya Iida; Kosuke Suzuki; Masaki Kawano; Tomoji Ozeki; Makoto Fujita
Journal:  Science       Date:  2006-09-01       Impact factor: 47.728

Review 5.  Supramolecular architectures generated by self-assembly of guanosine derivatives.

Authors:  Jeffery T Davis; Gian Piero Spada
Journal:  Chem Soc Rev       Date:  2006-11-07       Impact factor: 54.564

6.  ssDNA templated self-assembly of chromophores.

Authors:  Pim G A Janssen; Joke Vandenbergh; Joost L J van Dongen; E W Meijer; Albertus P H J Schenning
Journal:  J Am Chem Soc       Date:  2007-04-21       Impact factor: 15.419

Review 7.  Four-stranded nucleic acids: structure, function and targeting of G-quadruplexes.

Authors:  Julian Leon Huppert
Journal:  Chem Soc Rev       Date:  2008-05-06       Impact factor: 54.564

8.  Telomeric DNA dimerizes by formation of guanine tetrads between hairpin loops.

Authors:  W I Sundquist; A Klug
Journal:  Nature       Date:  1989-12-14       Impact factor: 49.962

9.  Water-mediated association provides an ion pair receptor.

Authors:  Frank W Kotch; Vladimir Sidorov; Yiu-Fai Lam; Katherine J Kayser; Hojun Li; Mark S Kaucher; Jeffery T Davis
Journal:  J Am Chem Soc       Date:  2003-12-10       Impact factor: 15.419

10.  Isostructural self-assembly of 2'-deoxyguanosine derivatives in aqueous and organic media.

Authors:  Marilyn García-Arriaga; Gerard Hobley; José M Rivera
Journal:  J Am Chem Soc       Date:  2008-07-22       Impact factor: 15.419

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  19 in total

1.  Crystallographic analysis of an RNA polymerase σ-subunit fragment complexed with -10 promoter element ssDNA: quadruplex formation as a possible tool for engineering crystal contacts in protein-ssDNA complexes.

Authors:  Andrey Feklistov; Seth A Darst
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-08-19

2.  Reversed Cation Selectivity of G8 -Octamer and G16 -Hexadecamer towards Monovalent and Divalent Cations.

Authors:  Ying He; Yanbin Zhang; Lukasz Wojtas; Novruz G Akhmedov; Qinhe Pan; Hao Guo; Xiaodong Shi
Journal:  Chem Asian J       Date:  2020-03-06

3.  Tuning supramolecular G-quadruplexes with mono- and divalent cations.

Authors:  Mariana Martín-Hidalgo; Marilyn García-Arriaga; Fernando González; José M Rivera
Journal:  Supramol Chem       Date:  2014-06-25       Impact factor: 1.688

4.  Distinct differences in metal ion specificity of RNA and DNA G-quadruplexes.

Authors:  Helena Guiset Miserachs; Daniela Donghi; Richard Börner; Silke Johannsen; Roland K O Sigel
Journal:  J Biol Inorg Chem       Date:  2016-10-04       Impact factor: 3.358

5.  Metal ions confinement defines the architecture of G-quartet, G-quadruplex fibrils and their assembly into nematic tactoids.

Authors:  Xiaoyang Li; Antoni Sánchez-Ferrer; Massimo Bagnani; Jozef Adamcik; Paride Azzari; Jingcheng Hao; Aixin Song; Hongguo Liu; Raffaele Mezzenga
Journal:  Proc Natl Acad Sci U S A       Date:  2020-04-21       Impact factor: 11.205

6.  Metallo-responsive switching between hexadecameric and octameric supramolecular G-quadruplexes.

Authors:  Mariana Martín-Hidalgo; José M Rivera
Journal:  Chem Commun (Camb)       Date:  2011-10-21       Impact factor: 6.222

7.  Synthesis of microporous hydrogen-bonded supramolecular organic frameworks through guanosine self-assembly.

Authors:  Ying He; Yanbin Zhang; Mengjia Liu; Kai Zhao; Chuan Shan; Lukasz Wojtas; Hao Guo; Aishun Ding; Xiaodong Shi
Journal:  Cell Rep Phys Sci       Date:  2021-07-29

8.  A photoresponsive supramolecular G-quadruplex.

Authors:  José M Rivera; Diana Silva-Brenes
Journal:  Org Lett       Date:  2013-05-03       Impact factor: 6.005

9.  Hierarchical formation of fibrillar and lamellar self-assemblies from guanosine-based motifs.

Authors:  Paolo Neviani; Dominique Sarazin; Marc Schmutz; Christian Blanck; Nicolas Giuseppone; Gian Piero Spada
Journal:  J Nucleic Acids       Date:  2010-07-13

10.  Walking a supramolecular tightrope: a self-assembled dodecamer from an 8-aryl-2'-deoxyguanosine derivative.

Authors:  María del C Rivera-Sánchez; Ivonne Andújar-de-Sanctis; Marilyn García-Arriaga; Vladimir Gubala; Gerard Hobley; José M Rivera
Journal:  J Am Chem Soc       Date:  2009-08-05       Impact factor: 15.419

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