Literature DB >> 21377814

Statistical data analysis of bacterial t-RFLP profiles in forensic soil comparisons.

Frederike C A Quaak1, Irene Kuiper.   

Abstract

Soil can play an important role in forensic investigations in linking suspects or objects to a crime scene. Bacterial populations are one of the biotic parameters in soil which can be used for comparisons. Terminal restriction fragment length polymorphism (t-RFLP) is used to visualize these populations. Here we present a method to compare soil t-RFLP profiles based on Bray-Curtis distances. We developed a decision model to predict the possible common source of unknown samples. Test cases in cooperation with the Police Academy of the Netherlands were used to validate the decision model. The results of these test cases are very promising, indicating that bacterial profiling is a useful additional tool in forensic soil comparisons.
Copyright © 2011 Elsevier Ireland Ltd. All rights reserved.

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Year:  2011        PMID: 21377814     DOI: 10.1016/j.forsciint.2011.02.005

Source DB:  PubMed          Journal:  Forensic Sci Int        ISSN: 0379-0738            Impact factor:   2.395


  6 in total

1.  Microbial forensics: next-generation sequencing as catalyst: The use of new sequencing technologies to analyze whole microbial communities could become a powerful tool for forensic and criminal investigations.

Authors:  Irene Kuiper
Journal:  EMBO Rep       Date:  2016-06-20       Impact factor: 8.807

2.  Microbial population analysis improves the evidential value of faecal traces in forensic investigations.

Authors:  Frederike C A Quaak; Mei-Lan M de Graaf; Rob Weterings; Irene Kuiper
Journal:  Int J Legal Med       Date:  2016-05-28       Impact factor: 2.686

3.  Microbial community assembly and succession on lake sturgeon egg surfaces as a function of simulated spawning stream flow rate.

Authors:  Masanori Fujimoto; James A Crossman; Kim T Scribner; Terence L Marsh
Journal:  Microb Ecol       Date:  2013-07-16       Impact factor: 4.552

4.  Bioinformatics Approach to Assess the Biogeographical Patterns of Soil Communities: The Utility for Soil Provenance.

Authors:  Natalie Damaso; Julian Mendel; Maria Mendoza; Eric J von Wettberg; Giri Narasimhan; DeEtta Mills
Journal:  J Forensic Sci       Date:  2018-01-22       Impact factor: 1.832

5.  Effects of Rare Microbiome Taxa Filtering on Statistical Analysis.

Authors:  Quy Cao; Xinxin Sun; Karun Rajesh; Naga Chalasani; Kayla Gelow; Barry Katz; Vijay H Shah; Arun J Sanyal; Ekaterina Smirnova
Journal:  Front Microbiol       Date:  2021-01-12       Impact factor: 5.640

6.  Molecular Analysis of the Cyanobacterial Community in Gastric Contents of Egrets with Symptoms of Steatitis.

Authors:  Tomoyasu Nishizawa; Yasuko Neagari; Takamasa Miura; Munehiko Asayama; Koichi Murata; Ken-Ichi Harada; Makoto Shirai
Journal:  Open Microbiol J       Date:  2015-11-03
  6 in total

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