Literature DB >> 21376090

Picobirnaviruses encode a protein with repeats of the ExxRxNxxxE motif.

Bruno Da Costa1, Stéphane Duquerroy, Bogdan Tarus, Bernard Delmas.   

Abstract

Picobirnaviruses possess a bisegmented double-stranded RNA genome. While the segment 2 encodes the RNA-dependent RNA polymerase, the segment 1 displays two open reading frames (ORFs). ORF2 was recently shown to code the capsid precursor and ORF1 product has not been characterized. In this study, we show that the three ORF1 sequences available in databases and representing three phylogenetically distant picobirnaviruses (two from human and one from rabbit hosts) encode proteins of various sizes (106-224 residues and without proline and cysteine) harbouring a particular sequence motif (ExxRxNxxxE) repeated four to ten times, depending on the virus species. Several algorithms predicted the three proteins to be mainly unfolded in the domains containing the repeats. The glycine-rich 25-40 amino acid long C-terminal domains containing hydrophobic residues with a periodicity of 3-4 residues are predicted structurally different of the upstream domains containing the motif repetitions. The ExxRxNxxxE sequence was not previously identified as a short linear motif in eukaryotic and prokaryotic proteins. Its function remains elusive.
Copyright © 2011 Elsevier B.V. All rights reserved.

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Year:  2011        PMID: 21376090     DOI: 10.1016/j.virusres.2011.02.018

Source DB:  PubMed          Journal:  Virus Res        ISSN: 0168-1702            Impact factor:   3.303


  10 in total

1.  Identification of multiple novel viruses, including a parvovirus and a hepevirus, in feces of red foxes.

Authors:  Rogier Bodewes; Joke van der Giessen; Bart L Haagmans; Albert D M E Osterhaus; Saskia L Smits
Journal:  J Virol       Date:  2013-04-24       Impact factor: 5.103

Review 2.  Epidemiology, phylogeny, and evolution of emerging enteric Picobirnaviruses of animal origin and their relationship to human strains.

Authors:  Yashpal S Malik; Naveen Kumar; Kuldeep Sharma; Kuldeep Dhama; Muhammad Zubair Shabbir; Balasubramanian Ganesh; Nobumichi Kobayashi; Krisztian Banyai
Journal:  Biomed Res Int       Date:  2014-07-17       Impact factor: 3.411

3.  High Diversity of Genogroup I Picobirnaviruses in Mammals.

Authors:  Patrick C Y Woo; Jade L L Teng; Ru Bai; Annette Y P Wong; Paolo Martelli; Suk-Wai Hui; Alan K L Tsang; Candy C Y Lau; Syed S Ahmed; Cyril C Y Yip; Garnet K Y Choi; Kenneth S M Li; Carol S F Lam; Susanna K P Lau; Kwok-Yung Yuen
Journal:  Front Microbiol       Date:  2016-11-23       Impact factor: 5.640

4.  An optimistic protein assembly from sequence reads salvaged an uncharacterized segment of mouse picobirnavirus.

Authors:  Gabriel Gonzalez; Michihito Sasaki; Lucy Burkitt-Gray; Tomonori Kamiya; Noriko M Tsuji; Hirofumi Sawa; Kimihito Ito
Journal:  Sci Rep       Date:  2017-01-10       Impact factor: 4.379

5.  Marmota himalayana in the Qinghai-Tibetan plateau as a special host for bi-segmented and unsegmented picobirnaviruses.

Authors:  Xue-Lian Luo; Shan Lu; Dong Jin; Jing Yang; Shu-Sheng Wu; Jianguo Xu
Journal:  Emerg Microbes Infect       Date:  2018-03-07       Impact factor: 7.163

Review 6.  The True Host/s of Picobirnaviruses.

Authors:  Souvik Ghosh; Yashpal S Malik
Journal:  Front Vet Sci       Date:  2021-01-20

7.  Emergence of a Distinct Picobirnavirus Genotype Circulating in Patients Hospitalized with Acute Respiratory Illness.

Authors:  Michael G Berg; Kenn Forberg; Lester J Perez; Ka-Cheung Luk; Todd V Meyer; Gavin A Cloherty
Journal:  Viruses       Date:  2021-12-17       Impact factor: 5.048

Review 8.  Order in Disorder as Observed by the "Hydrophobic Cluster Analysis" of Protein Sequences.

Authors:  Tristan Bitard-Feildel; Alexis Lamiable; Jean-Paul Mornon; Isabelle Callebaut
Journal:  Proteomics       Date:  2018-10-30       Impact factor: 3.984

9.  Detection of novel RNA viruses from free-living gorillas, Republic of the Congo: genetic diversity of picobirnaviruses.

Authors:  Raja Duraisamy; Jean Akiana; Bernard Davoust; Oleg Mediannikov; Caroline Michelle; Catherine Robert; Henri-Joseph Parra; Didier Raoult; Philippe Biagini; Christelle Desnues
Journal:  Virus Genes       Date:  2018-02-23       Impact factor: 2.332

10.  High Prevalence of Genogroup I and Genogroup II Picobirnaviruses in Dromedary Camels.

Authors:  Jade L L Teng; Ulrich Wernery; Po Chun Wong; Elaine Chan; Hwei Huih Lee; Sunitha Joseph; Ru Bai; Ying Tang; Emily Y M Wong; Susanna K P Lau; Patrick C Y Woo
Journal:  Viruses       Date:  2021-03-08       Impact factor: 5.048

  10 in total

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