Literature DB >> 21371478

The architecture and conservation pattern of whole-cell control circuitry.

Harley H McAdams1, Lucy Shapiro.   

Abstract

The control circuitry that directs and paces Caulobacter cell cycle progression involves the entire cell operating as an integrated system. This control circuitry monitors the environment and the internal state of the cell, including the cell topology, as it orchestrates orderly activation of cell cycle subsystems and Caulobacter's asymmetric cell division. The proteins of the Caulobacter cell cycle control system and its internal organization are co-conserved across many alphaproteobacteria species, but there are great differences in the regulatory apparatus' functionality and peripheral connectivity to other cellular subsystems from species to species. This pattern is similar to that observed for the "kernels" of the regulatory networks that regulate development of metazoan body plans. The Caulobacter cell cycle control system has been exquisitely optimized as a total system for robust operation in the face of internal stochastic noise and environmental uncertainty. When sufficient details accumulate, as for Caulobacter cell cycle regulation, the system design has been found to be eminently rational and indeed consistent with good design practices for human-designed asynchronous control systems.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21371478      PMCID: PMC3108490          DOI: 10.1016/j.jmb.2011.02.041

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  54 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-22       Impact factor: 11.205

3.  Stochastic switching in gene networks can occur by a single-molecule event or many molecular steps.

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5.  Stochastic mechanisms in gene expression.

Authors:  H H McAdams; A Arkin
Journal:  Proc Natl Acad Sci U S A       Date:  1997-02-04       Impact factor: 11.205

Review 6.  Why and how bacteria localize proteins.

Authors:  L Shapiro; H H McAdams; R Losick
Journal:  Science       Date:  2009-11-27       Impact factor: 47.728

Review 7.  System-level design of bacterial cell cycle control.

Authors:  Harley H McAdams; Lucy Shapiro
Journal:  FEBS Lett       Date:  2009-12-17       Impact factor: 4.124

8.  Feedback control of DnaA-mediated replication initiation by replisome-associated HdaA protein in Caulobacter.

Authors:  Justine Collier; Lucy Shapiro
Journal:  J Bacteriol       Date:  2009-07-24       Impact factor: 3.490

Review 9.  Spatial regulation in Caulobacter crescentus.

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Journal:  Curr Opin Microbiol       Date:  2009-10-23       Impact factor: 7.934

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Authors:  Ron Caspi; Tomer Altman; Joseph M Dale; Kate Dreher; Carol A Fulcher; Fred Gilham; Pallavi Kaipa; Athikkattuvalasu S Karthikeyan; Anamika Kothari; Markus Krummenacker; Mario Latendresse; Lukas A Mueller; Suzanne Paley; Liviu Popescu; Anuradha Pujar; Alexander G Shearer; Peifen Zhang; Peter D Karp
Journal:  Nucleic Acids Res       Date:  2009-10-22       Impact factor: 16.971

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  17 in total

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Authors:  Jennifer B Kozdon; Michael D Melfi; Khai Luong; Tyson A Clark; Matthew Boitano; Susana Wang; Bo Zhou; Diego Gonzalez; Justine Collier; Stephen W Turner; Jonas Korlach; Lucy Shapiro; Harley H McAdams
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3.  Synchronization of Caulobacter crescentus for investigation of the bacterial cell cycle.

Authors:  Jared M Schrader; Lucy Shapiro
Journal:  J Vis Exp       Date:  2015-04-08       Impact factor: 1.355

4.  Dynamic translation regulation in Caulobacter cell cycle control.

Authors:  Jared M Schrader; Gene-Wei Li; W Seth Childers; Adam M Perez; Jonathan S Weissman; Lucy Shapiro; Harley H McAdams
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-17       Impact factor: 11.205

5.  Complete genome sequence of Caulobacter crescentus bacteriophage φCbK.

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Review 7.  Fifty years after the replicon hypothesis: cell-specific master regulators as new players in chromosome replication control.

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8.  Essential Genome of the Metabolically Versatile Alphaproteobacterium Rhodopseudomonas palustris.

Authors:  Kieran B Pechter; Larry Gallagher; Harley Pyles; Colin S Manoil; Caroline S Harwood
Journal:  J Bacteriol       Date:  2015-12-28       Impact factor: 3.490

9.  The Caulobacter crescentus ctrA P1 promoter is essential for the coordination of cell cycle events that prevent the overinitiation of DNA replication.

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10.  The essential genome of a bacterium.

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