| Literature DB >> 21371325 |
Zeinab K Hassan1, Mohamed M Hafez, Tarek M Mansor, Abdel Rahman N Zekri.
Abstract
BACKGROUND: Occult HBV infection accelerates the progression of liver fibrosis, cirrhosis, and finally leading to hepatocellular carcinoma (HCC). This study analyzed the occult HBV-genotypes in HCC patients.Entities:
Mesh:
Substances:
Year: 2011 PMID: 21371325 PMCID: PMC3058093 DOI: 10.1186/1743-422X-8-90
Source DB: PubMed Journal: Virol J ISSN: 1743-422X Impact factor: 4.099
Sequences of primer pairs16 used for HBV PCR detection:
| Core gene | ||
|---|---|---|
| C1s: | 5'CTGGGAGGAGTTGGGGGA3' | 1730-1747 |
| C2a: | 5'GTAGAAGAATAAAGCCC3' | 2503-2487 |
| C3s: | 5'GGTCTTTGTACTCGGAGGCTG3' | 1763-1783 |
| C4a: | 5'ATACTAACATTGACATTCCC3' | 2455-2436 |
| Surface gene | ||
| S-1s: | 5'AGAACATCGCATCAGGACTC3' | 159-178 |
| S-2a: | 5'CATAGGTATCTTGCGAAAGC3' | 642-623 |
| S-3s: | 5'AGGACCCCTGCTCGTGTTAC3' | 181-200 |
| S-4a: | 5'AGATGATGGGATGGGAATAC3' | 619-600 |
| X gene | ||
| X1s: | 5'CTAGCCGCTTGTTTTGCTCG3' | 1282-1301 |
| X2a: | 5'TTATGCCTACAGCCTCCTAG3' | 1666-1647 |
| X3s: | 5'GGTCTTACATAAGAGGACTC3' | 1518-1537 |
| X4a: | 5'GTTCACGGTGGTCTCCAT3' | 1625-160 |
HBV genotyping primers sequence
| Primer Sequence | |
|---|---|
| P1 5'-TCA CCA TAT TCT TGG GAA CAA GA-3' | (nt 2823-2845, universal, sense) |
| S1-2 5'-CGA ACC ACT GAA CAA ATG GC-3' | (nt 685-704, universal, antisense) |
| B2 5'-GGC TCM AGT TCM GGA ACA GT-3' | (nt 67-86, types A to E specific, sense) |
| BA1R 5'-CTC GCG GAG ATT GAC GAG ATG T-3' | (nt 113-134, type A specific, antisense) |
| B1R 5'-CAG GTT GGT GAG TGA CTG GAG A-3' | (nt 324-345, type B specific, antisense) |
| BC1R 5'-GGT CCT AGG AAT CCT GAT GTT G-3' | (nt 165-186, type C specific, antisense) |
| BD1 5'-GCC AAC AAG GTA GGA GCT-3' | (nt 2979-2996, type D specific, sense) |
| BE1 5'-CAC CAG AAA TCC AGA TTG GGA CCA-3' | (nt 2955-2978, type E specific, sense) |
| BF1 5'-GYT ACG GTC CAG GGT TAC CA-3' | (nt 3032-3051, type F specific, sense) |
| B2R 5'-GGA GGC GGA TYT GCT GGC AA-3' | (nt 3078-3097, types D to F specific, antisense) |
a An "M" represents a nucleotide that could be either an A or a C; a"Y" represents a nucleotide that could be either a C or a T. nt: nucleotide.
The characteristics of the study subjects
| Characteristics | |
|---|---|
| No. of the participants | 40 |
| No. of the controls | 10 |
| Age-years (range)* | 55 ± 9 (25-72) |
| Sex Male/Female | 32/8 |
| Elevated serum ALT levels with HCV Ab | 19/40 (45%) |
| Anti-HBs | 16/40(40%) |
| Anti-HBc | 30/40(75%) |
*Expressed as mean+SD (range); ALT (normal range (0-41 IU/L)
Correlation between clinical and virological data in the intrahepatic HBV DNA
| Variables | No.(%) |
|---|---|
| HCV-RNA | 10/25 (40%) |
| High AFP | 15/25(60%) |
| Liver cirrhosis | 18/25(72%) |
| Tumor Grade I | 4/25(16%) |
| Tumor Grade II | 13/25(52%) |
| Tumor Grade III | 8/25(32%) |
| X-gene and HBcIgG +ve | 12/25(48%) |
| S-gene and HBcIgG +ve | 16/25(64%) |
| C-gene and HBcIgG +ve | 20/25(80%) |
| HBV genotype A | 1/25 (4%) |
| HBV genotype B | 6/25 (24%) |
| HBV genotype C | 2/25 (8%) |
| HBV genotype D | 8/25 (32%) |
| HBV mixed genotype | 5/25 (20%) |