Literature DB >> 21369935

Charge sensitivity analysis in force-field-atom resolution.

Anna Stachowicz1, Anna Styrcz, Jacek Korchowiec.   

Abstract

Charge sensitivity analysis (CSA) was extended to AMBER force-field resolution. The effective electronegativity and hardness data were found using evolutionary algorithms. Four model hardness matrices based on the classical electrostatic, Mataga-Nishimoto, Ohno, and Louwen-Vogt interpolation formulae were considered. Mulliken population analysis and electrostatically derived charges (CHELPG) were taken into account. It was demonstrated that the Ohno interpolation formula gives the best fit to Mulliken charges. For all molecules from the training set and all model hardness matrices, Mulliken charges were reproduced more accurately than CHELPG charges, indicating their good transferability from system to system. The effective electronegativities and hardnesses obtained were further verified by applying CSA to molecules from a validation set that was different from the training set. The correlation between CSA and Mulliken charges was of the same quality as that obtained for the training set.

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Year:  2011        PMID: 21369935     DOI: 10.1007/s00894-011-1006-7

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  6 in total

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Authors:  Alexander D Mackerell; Michael Feig; Charles L Brooks
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2.  An Interpretation of Bond Lengths and a Classification of Bonds.

Authors:  R T Sanderson
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3.  Electronegativity equalization method: parameterization and validation for organic molecules using the Merz-Kollman-Singh charge distribution scheme.

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Journal:  J Comput Chem       Date:  2009-05       Impact factor: 3.376

4.  A modified electronegativity equalization method for fast and accurate calculation of atomic charges in large biological molecules.

Authors:  Yongzhong Ouyang; Fei Ye; Yizeng Liang
Journal:  Phys Chem Chem Phys       Date:  2009-05-26       Impact factor: 3.676

5.  Toward an alternative hardness kernel matrix structure in the Electronegativity Equalization Method (EEM).

Authors:  J Chaves; J M Barroso; P Bultinck; R Carbó-Dorca
Journal:  J Chem Inf Model       Date:  2006 Jul-Aug       Impact factor: 4.956

6.  CHARMM fluctuating charge force field for proteins: I parameterization and application to bulk organic liquid simulations.

Authors:  Sandeep Patel; Charles L Brooks
Journal:  J Comput Chem       Date:  2004-01-15       Impact factor: 3.376

  6 in total
  2 in total

1.  Charge sensitivity approach to mutual polarization of reactants: molecular mechanics perspective.

Authors:  Anna Stachowicz; Marek Rogalski; Jacek Korchowiec
Journal:  J Mol Model       Date:  2013-02-08       Impact factor: 1.810

2.  Intermediate electrostatic field for the elongation method.

Authors:  Piotr Kuźniarowicz; Kai Liu; Yuriko Aoki; Feng Long Gu; Anna Stachowicz; Jacek Korchowiec
Journal:  J Mol Model       Date:  2014-05-31       Impact factor: 1.810

  2 in total

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