Literature DB >> 21369894

Development of computational methods to search for FoxA transcription factor binding sites, their experimental verification and application to the analysis of ChIP-seq data.

V G Levitsky1, D Yu Oshchepkov, N I Ershov, L O Bryzgalov, E V Antontseva, G V Vasiliev, T I Merkulova, N A Kolchanov.   

Abstract

Mesh：

Substances：

Year:  2011        PMID： 21369894     DOI： 10.1134/S1607672911010054

Source DB:  PubMed          Journal:  Dokl Biochem Biophys        ISSN： 1607-6729            Impact factor:   0.788


× No keyword cloud information.
  11 in total

1.  Transcription Regulatory Regions Database (TRRD): its status in 2002.

Authors:  N A Kolchanov; E V Ignatieva; E A Ananko; O A Podkolodnaya; I L Stepanenko; T I Merkulova; M A Pozdnyakov; N L Podkolodny; A N Naumochkin; A G Romashchenko
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

2.  HNF-3A, a hepatocyte-enriched transcription factor of novel structure is regulated transcriptionally.

Authors:  E Lai; V R Prezioso; E Smith; O Litvin; R H Costa; J E Darnell
Journal:  Genes Dev       Date:  1990-08       Impact factor: 11.361

Review 3.  The Foxa family of transcription factors in development and metabolism.

Authors:  J R Friedman; K H Kaestner
Journal:  Cell Mol Life Sci       Date:  2006-10       Impact factor: 9.261

4.  DNA binding properties of peroxisome proliferator-activated receptor subtypes on various natural peroxisome proliferator response elements. Importance of the 5'-flanking region.

Authors:  C Juge-Aubry; A Pernin; T Favez; A G Burger; W Wahli; C A Meier; B Desvergne
Journal:  J Biol Chem       Date:  1997-10-03       Impact factor: 5.157

5.  Nomenclature for incompletely specified bases in nucleic acid sequences: recommendations 1984.

Authors:  A Cornish-Bowden
Journal:  Nucleic Acids Res       Date:  1985-05-10       Impact factor: 16.971

6.  A functional hepatocyte nuclear factor 3 binding site is a critical component of the duck hepatitis B virus major surface antigen promoter.

Authors:  T Welsheimer; J E Newbold
Journal:  J Virol       Date:  1996-12       Impact factor: 5.103

7.  Participation of Ets transcription factors in the glucocorticoid response of the rat tyrosine aminotransferase gene.

Authors:  M L Espinás; J Roux; J Ghysdael; R Pictet; T Grange
Journal:  Mol Cell Biol       Date:  1994-06       Impact factor: 4.272

8.  Efficient exact motif discovery.

Authors:  Tobias Marschall; Sven Rahmann
Journal:  Bioinformatics       Date:  2009-06-15       Impact factor: 6.937

9.  Effective transcription factor binding site prediction using a combination of optimization, a genetic algorithm and discriminant analysis to capture distant interactions.

Authors:  Victor G Levitsky; Elena V Ignatieva; Elena A Ananko; Igor I Turnaev; Tatyana I Merkulova; Nikolay A Kolchanov; T C Hodgman
Journal:  BMC Bioinformatics       Date:  2007-12-19       Impact factor: 3.169

10.  Global analysis of in vivo Foxa2-binding sites in mouse adult liver using massively parallel sequencing.

Authors:  Elizabeth D Wederell; Mikhail Bilenky; Rebecca Cullum; Nina Thiessen; Melis Dagpinar; Allen Delaney; Richard Varhol; YongJun Zhao; Thomas Zeng; Bridget Bernier; Matthew Ingham; Martin Hirst; Gordon Robertson; Marco A Marra; Steven Jones; Pamela A Hoodless
Journal:  Nucleic Acids Res       Date:  2008-07-08       Impact factor: 16.971
View more
  1 in total

1.  Application of experimentally verified transcription factor binding sites models for computational analysis of ChIP-Seq data.

Authors:  Victor G Levitsky; Ivan V Kulakovskiy; Nikita I Ershov; Dmitry Yu Oshchepkov; Vsevolod J Makeev; T C Hodgman; Tatyana I Merkulova
Journal:  BMC Genomics       Date:  2014-01-29       Impact factor: 3.969
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.