Literature DB >> 21365679

Structural repertoire of immunoglobulin λ light chains.

Anna Chailyan1, Paolo Marcatili, Davide Cirillo, Anna Tramontano.   

Abstract

The immunoglobulin λ isotype is present in nearly all vertebrates and plays an important role in the human immune system. Despite its importance, few systematic studies have been performed to analyze the structural conformation of its variable regions, contrary to what is the case for κ and heavy chains. We show here that an analysis of the structures of λ chains allows the definition of a discrete set of recurring conformations (canonical structures) of their hypervariable loops and, most importantly, the identification of sequence constraints that can be used to predict their structure. We also show that the structural repertoire of λ chains is different and more varied than that of the κ chains, consistently with the current view of the involvement of the two major light-chain families in complementary strategies of the immune system to ensure a fine tuning between diversity and stability in antigen recognition.
Copyright © 2011 Wiley-Liss, Inc.

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Year:  2011        PMID: 21365679     DOI: 10.1002/prot.22979

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  23 in total

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Authors:  Sue Townsend; Brian J Fennell; James R Apgar; Matthew Lambert; Barry McDonnell; Joanne Grant; Jason Wade; Edward Franklin; Niall Foy; Deirdre Ní Shúilleabháin; Conor Fields; Alfredo Darmanin-Sheehan; Amy King; Janet E Paulsen; Timothy P Hickling; Lioudmila Tchistiakova; Orla Cunningham; William J J Finlay
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-30       Impact factor: 11.205

2.  Antibody modeling using the prediction of immunoglobulin structure (PIGS) web server [corrected].

Authors:  Paolo Marcatili; Pier Paolo Olimpieri; Anna Chailyan; Anna Tramontano
Journal:  Nat Protoc       Date:  2014-11-06       Impact factor: 13.491

3.  In vitro evolution of antibody affinity via insertional scanning mutagenesis of an entire antibody variable region.

Authors:  Kalliopi Skamaki; Stephane Emond; Matthieu Chodorge; John Andrews; D Gareth Rees; Daniel Cannon; Bojana Popovic; Andrew Buchanan; Ralph R Minter; Florian Hollfelder
Journal:  Proc Natl Acad Sci U S A       Date:  2020-10-16       Impact factor: 11.205

4.  An ultra-specific avian antibody to phosphorylated tau protein reveals a unique mechanism for phosphoepitope recognition.

Authors:  Heather H Shih; Chao Tu; Wei Cao; Anne Klein; Renee Ramsey; Brian J Fennell; Matthew Lambert; Deirdre Ní Shúilleabháin; Bénédicte Autin; Eugenia Kouranova; Sri Laxmanan; Steven Braithwaite; Leeying Wu; Mostafa Ait-Zahra; Anthony J Milici; Jo Ann Dumin; Edward R LaVallie; Maya Arai; Christopher Corcoran; Janet E Paulsen; Davinder Gill; Orla Cunningham; Joel Bard; Lydia Mosyak; William J J Finlay
Journal:  J Biol Chem       Date:  2012-11-12       Impact factor: 5.157

5.  Blind prediction performance of RosettaAntibody 3.0: grafting, relaxation, kinematic loop modeling, and full CDR optimization.

Authors:  Brian D Weitzner; Daisuke Kuroda; Nicholas Marze; Jianqing Xu; Jeffrey J Gray
Journal:  Proteins       Date:  2014-03-31

6.  Reconciling the structural attributes of avian antibodies.

Authors:  Paul J Conroy; Ruby H P Law; Sarah Gilgunn; Stephen Hearty; Tom T Caradoc-Davies; Gordon Lloyd; Richard J O'Kennedy; James C Whisstock
Journal:  J Biol Chem       Date:  2014-04-15       Impact factor: 5.157

7.  Antigen nature and complexity influence human antibody light chain usage and specificity.

Authors:  Kenneth Smith; Hemangi Shah; Jennifer J Muther; Angie L Duke; Kathleen Haley; Judith A James
Journal:  Vaccine       Date:  2016-04-23       Impact factor: 3.641

Review 8.  Computer-aided antibody design.

Authors:  Daisuke Kuroda; Hiroki Shirai; Matthew P Jacobson; Haruki Nakamura
Journal:  Protein Eng Des Sel       Date:  2012-06-02       Impact factor: 1.650

9.  Natural and man-made V-gene repertoires for antibody discovery.

Authors:  William J J Finlay; Juan C Almagro
Journal:  Front Immunol       Date:  2012-11-15       Impact factor: 7.561

10.  Prediction of site-specific interactions in antibody-antigen complexes: the proABC method and server.

Authors:  Pier Paolo Olimpieri; Anna Chailyan; Anna Tramontano; Paolo Marcatili
Journal:  Bioinformatics       Date:  2013-06-26       Impact factor: 6.937

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