Literature DB >> 21360319

Coarse-grained modeling for macromolecular chemistry.

Hossein Ali Karimi-Varzaneh1, Florian Müller-Plathe.   

Abstract

The physical phenomena and properties of macromolecules such as polymers or biological materials cover a wide range of length and time scales: from Ångströms and subpicoseconds to millimeters and minutes. Multiscale simulation methods link different computer simulation approaches, which cover these scales and the respective levels of resolution. Different simulation methods that bridge the atomistic description of the system to a coarser level have been developed in order to reach the mesoscopic time and length scales important for many material properties. Here, we give a short introduction to multiscale simulation approaches in macromolecular chemistry. Then, we review the coarse-grained simulation models developed to drive a simple model from a more detailed one. Some different methodological aspects such as time scale and dynamics in coarse-grained simulations and several typical problems are briefly addressed, finishing with a look at future challenges.

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Year:  2012        PMID: 21360319     DOI: 10.1007/128_2010_122

Source DB:  PubMed          Journal:  Top Curr Chem        ISSN: 0340-1022


  7 in total

1.  The "sugar" coarse-grained DNA model.

Authors:  N A Kovaleva; I P Koroleva Kikot; M A Mazo; E A Zubova
Journal:  J Mol Model       Date:  2017-02-09       Impact factor: 1.810

2.  A multiscale scheme for simulating polymer Tg.

Authors:  Chaofu Wu
Journal:  J Mol Model       Date:  2018-11-08       Impact factor: 1.810

Review 3.  Molecular Modeling in Anion Exchange Membrane Research: A Brief Review of Recent Applications.

Authors:  Mirat Karibayev; Sandugash Kalybekkyzy; Yanwei Wang; Almagul Mentbayeva
Journal:  Molecules       Date:  2022-06-02       Impact factor: 4.927

4.  Melt-phase behavior of collapsed PMMA/PVC chains revealed by multiscale simulations.

Authors:  Chaofu Wu
Journal:  J Mol Model       Date:  2016-04-01       Impact factor: 1.810

5.  COFFDROP: A Coarse-Grained Nonbonded Force Field for Proteins Derived from All-Atom Explicit-Solvent Molecular Dynamics Simulations of Amino Acids.

Authors:  Casey T Andrews; Adrian H Elcock
Journal:  J Chem Theory Comput       Date:  2014-10-07       Impact factor: 6.006

6.  Molecular basis for the dissociation dynamics of protein A-immunoglobulin G1 complex.

Authors:  Fu-Feng Liu; Bo Huang; Xiao-Yan Dong; Yan Sun
Journal:  PLoS One       Date:  2013-06-12       Impact factor: 3.240

7.  Extension of the QuickFF force field protocol for an improved accuracy of structural, vibrational, mechanical and thermal properties of metal-organic frameworks.

Authors:  Louis Vanduyfhuys; Steven Vandenbrande; Jelle Wieme; Michel Waroquier; Toon Verstraelen; Veronique Van Speybroeck
Journal:  J Comput Chem       Date:  2018-02-02       Impact factor: 3.376

  7 in total

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