| Literature DB >> 21359216 |
François Brischoux1, Gabriel E A Gartner, Theodore Garland, Xavier Bonnet.
Abstract
BACKGROUND: Physiological adaptations that allow air-breathing vertebrates to remain underwater for long periods mainly involve modifications of the respiratory system, essentially through increased oxygen reserves. Physiological constraints on dive duration tend to be less critical for ectotherms than for endotherms because the former have lower mass-specific metabolic rates. Moreover, comparative studies between marine and terrestrial ectotherms have yet to show overall distinct physiological differences specifically associated with oxygen reserves. METHODOLOGY/PRINCIPALEntities:
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Year: 2011 PMID: 21359216 PMCID: PMC3040194 DOI: 10.1371/journal.pone.0017077
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1Phylogeny used for analyses with corresponding Hct for each species (see Online Appendix S1, S2 & S3 for details).
Branch lengths represent the arbitrary method of Pagel, as used for statistical analyses. Black bars are for terrestrial species, light grey bars for semi-aquatic species, hatched bars for aquatic species, and white bars for marine species. Left-to-right order matches order of species in Online Appendix S1.
Table of alternate regression models for predicting Hct in snakes.
| Conventional (OLS) | Phylogenetic (PGLS) | Phylogenetic with O-U model (RegOU) | |||||||||||||||||
| Model | Ln ML | AIC | AICc | MSE | SEE | r2 | Ln ML | AIC | AICc | MSE | SEE | r2 | Ln ML | AIC | AICc | MSE | SEE | REML d | r2 |
| No independent variable | −209.29 | 422.59 | 422.78 | 30.71 | 5.54 | 0 | −223.48 | 450.95 | 451.14 | 46.90 | 6.85 | 0 | −208.24 | 422.47 | 422.85 | 29.77 | 5.46 | 0.124 | 0 |
| Clade | −203.09 | 422.18 | 424.67 | 28.08 | 5.30 | 0.17 | −223.15 | 462.29 | 464.77 | 51.09 | 7.15 | 0.01 | −202.75 | 423.50 | 426.66 | 28.01 | 5.29 | 0.057 | 0.15 |
| Habitat | −198.05 | 406.11 | 407.09 | 23.01 | 4.80 | 0.28 | −207.65 | 425.30 | 426.29 | 30.64 | 5.53 | 0.38 | −197.58 | 407.15 | 408.55 | 22.85 | 4.78 | 0.195 | 0.27 |
| Clade + Habitat |
|
|
|
|
|
|
| 432.72 | 437.52 | 31.62 | 5.62 | 0.41 |
| 390.39 | 396.17 | 1.65 | 4.07 | 0.035 | 0.52 |
Based on AIC and AICc (smaller values indicate better-fitting and more parsimonious models), the OLS (Clade+Habitat) model (shown in boldface) is preferred. ML, MSE, SEE, and REML d stand for maximum likelihood, mean squared error, standard error of the estimate, and REML estimate of d (the OU transformation parameter), respectively. See text and [21], [27] for further explanations.
Full models to predict Hct.
| Conventional (OLS) | Phylogenetic with OU transform | |||||||||
| Variable | Coefficient | SE | F | df | P | Coefficient | SE | F | df | P |
| Y-intercept | 27.0462 | 1.120 | 26.7951 | 1.259 | ||||||
| Semi-aquatic |
| 2.381 | 1.98 | 1, 57 | 0.1648 |
| 2.395 | 2.559 | 1, 57 | 0.1152 |
| Aquatic |
| 5.447 | 18.58 | 1, 57 | <0.0001 |
| 5.571 | 17.891 | 1, 57 | <0.0001 |
| Marine | 5.3206 | 2.278 | 5.45 | 1, 57 | 0.0231 | 5.2367 | 2.363 | 4.911 | 1, 57 | 0.0307 |
| Boidae |
| 2.385 | 0.19 | 1, 57 | 0.6646 |
| 2.600 | 0.129 | 1, 57 | 0.7208 |
| Acrochordidae | 17.7332 | 4.771 | 13.81 | 1, 57 | 0.0005 | 18.068 | 4.897 | 13.612 | 1, 57 | 0.0005 |
| Viperidae |
| 1.565 | 2.25 | 1, 57 | 0.1391 |
| 1.750 | 1.381 | 1, 57 | 0.2448 |
| Homalopsidae |
| 4.771 | <0.01 | 1, 57 | 0.9723 |
| 4.897 | <0.01 | 1, 57 | 0.9728 |
| Elapidae |
| 2.329 | 0.22 | 1, 57 | 0.6408 |
| 2.434 | 0.085 | 1, 57 | 0.7717 |
| Natricinae | 5.7192 | 2.900 | 3.89 | 1, 57 | 0.0534 | 6.2637 | 3.019 | 4.304 | 1, 57 | 0.0425 |
| Habitat | 15.41 | 3, 57 | <0.0001 | 14.69 | 3, 57 | <0.0001 | ||||
| Clade | 5.30 | 6, 57 | 0.0002 | 4.92 | 6, 57 | 0.0004 | ||||
Although OLS is the preferred model based on AICc (Table 1), we also show the next-best RegOU model. Note that the base groups for Habitat and Clade are Terrestrial and Colubrinae, respectively. Partial regression coefficients and significance levels are relative to those base groups. See text and [21], [27] for further explanations.
Figure 2Hct (simple mean ± SE) in relation to family (a) and habitat (b).
Numbers in the bars indicate sample size (number of species).