Literature DB >> 21358054

The use of low-resolution phasing followed by phase extension from 7.6 to 2.5 Å resolution with noncrystallographic symmetry to solve the structure of a bacteriophage capsid protein.

Nicola G A Abrescia1, Jonathan M Grimes, Hanna M Oksanen, Jaana K H Bamford, Dennis H Bamford, David I Stuart.   

Abstract

P2, the major capsid protein of bacteriophage PM2, adopts the double β-barrel fold characteristic of the PRD1-adenoviral lineage. The 2.5 Å resolution X-ray data obtained by analysis of the two major lattices of a multiple crystal of P2 were phased by molecular replacement, using as a search model structure factors to 7.6 Å resolution obtained from electron density cut from the map of the entire PM2 virion. Phase extension to 2.5 Å resolution used solely sixfold cycling averaging and solvent flattening. This represents an atypical example of an oligomeric protein for which the structure has been determined at high resolution by bootstrapping from low-resolution initial phases.

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Year:  2011        PMID: 21358054     DOI: 10.1107/S0907444911002277

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  4 in total

1.  Exploiting large non-isomorphous differences for phase determination of a G-segment invertase-DNA complex.

Authors:  Christopher J Ritacco; Thomas A Steitz; Jimin Wang
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-02-15

2.  Initiating heavy-atom-based phasing by multi-dimensional molecular replacement.

Authors:  Bjørn Panyella Pedersen; Pontus Gourdon; Xiangyu Liu; Jesper Lykkegaard Karlsen; Poul Nissen
Journal:  Acta Crystallogr D Struct Biol       Date:  2016-03-01       Impact factor: 7.652

3.  An improved method for phasing crystal structures with low non-crystallographic symmetry using cryo-electron microscopy data.

Authors:  Jia Wang; Weiguang Wang; Wen Song; Zhifu Han; Heqiao Zhang; Jijie Chai; Hongwei Wang; Jiawei Wang
Journal:  Protein Cell       Date:  2015-12       Impact factor: 14.870

Review 4.  From lows to highs: using low-resolution models to phase X-ray data.

Authors:  David I Stuart; Nicola G A Abrescia
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-10-18
  4 in total

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