Literature DB >> 21356565

Development of an internet based system for modeling biotin metabolism using Bayesian networks.

Jinglei Zhou1, Dong Wang, Vicki Schlegel, Janos Zempleni.   

Abstract

Biotin is an essential water-soluble vitamin crucial for maintaining normal body functions. The importance of biotin for human health has been under-appreciated but there is plenty of opportunity for future research with great importance for human health. Currently, carrying out predictions of biotin metabolism involves tedious manual manipulations. In this paper, we report the development of BiotinNet, an internet based program that uses Bayesian networks to integrate published data on various aspects of biotin metabolism. Users can provide a combination of values on the levels of biotin related metabolites to obtain the predictions on other metabolites that are not specified. As an inherent feature of Bayesian networks, the uncertainty of the prediction is also quantified and reported to the user. This program enables convenient in silico experiments regarding biotin metabolism, which can help researchers design future experiments while new data can be continuously incorporated.
Copyright © 2011 Elsevier Ireland Ltd. All rights reserved.

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Year:  2011        PMID: 21356565      PMCID: PMC3132571          DOI: 10.1016/j.cmpb.2011.02.004

Source DB:  PubMed          Journal:  Comput Methods Programs Biomed        ISSN: 0169-2607            Impact factor:   5.428


  9 in total

1.  A Bayesian networks approach for predicting protein-protein interactions from genomic data.

Authors:  Ronald Jansen; Haiyuan Yu; Dov Greenbaum; Yuval Kluger; Nevan J Krogan; Sambath Chung; Andrew Emili; Michael Snyder; Jack F Greenblatt; Mark Gerstein
Journal:  Science       Date:  2003-10-17       Impact factor: 47.728

Review 2.  Inferring cellular networks using probabilistic graphical models.

Authors:  Nir Friedman
Journal:  Science       Date:  2004-02-06       Impact factor: 47.728

3.  Genetic dissection and prognostic modeling of overt stroke in sickle cell anemia.

Authors:  Paola Sebastiani; Marco F Ramoni; Vikki Nolan; Clinton T Baldwin; Martin H Steinberg
Journal:  Nat Genet       Date:  2005-03-20       Impact factor: 38.330

Review 4.  Marginal biotin deficiency is teratogenic in mice and perhaps humans: a review of biotin deficiency during human pregnancy and effects of biotin deficiency on gene expression and enzyme activities in mouse dam and fetus.

Authors:  Donald M Mock
Journal:  J Nutr Biochem       Date:  2005-07       Impact factor: 6.048

5.  A Bayesian methodology for scaling radiation studies from animals to man.

Authors:  W DuMouchel; P G Groër
Journal:  Health Phys       Date:  1989       Impact factor: 1.316

6.  Urinary organic acids in infant malnutrition.

Authors:  M Terán-García; I Ibarra; A Velázquez
Journal:  Pediatr Res       Date:  1998-09       Impact factor: 3.756

7.  3-Hydroxypropionic acid and methylcitric acid are not reliable indicators of marginal biotin deficiency in humans.

Authors:  Donald M Mock; Cindy L Henrich-Shell; Nadine Carnell; Phyllis Stumbo; Nell I Mock
Journal:  J Nutr       Date:  2004-02       Impact factor: 4.798

Review 8.  A novel, enigmatic histone modification: biotinylation of histones by holocarboxylase synthetase.

Authors:  Yousef I Hassan; Janos Zempleni
Journal:  Nutr Rev       Date:  2008-12       Impact factor: 7.110

9.  Biotin and biotinidase deficiency.

Authors:  Janos Zempleni; Yousef I Hassan; Subhashinee Sk Wijeratne
Journal:  Expert Rev Endocrinol Metab       Date:  2008-11-01
  9 in total

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