Literature DB >> 21352934

Integrating statistical genetic and geospatial methods brings new power to phylogeography.

Lauren M Chan1, Jason L Brown, Anne D Yoder.   

Abstract

The field of phylogeography continues to grow in terms of power and accessibility. Initially uniting population genetics and phylogenetics, it now spans disciplines as diverse as geology, statistics, climatology, ecology, physiology, and bioinformatics to name a few. One major and recent integration driving the field forward is between "statistical phylogeography" and Geographic Information Systems (GIS) (Knowles, 2009). Merging genetic and geospatial data, and their associated methodological toolkits, is helping to bring explicit hypothesis testing to the field of phylogeography. Hypotheses derived from one approach can be reciprocally tested with data derived from the other field and the synthesis of these data can help place demographic events in an historical and spatial context, guide genetic sampling, and point to areas for further investigation. Here, we present three practical examples of empirical analysis that integrate statistical genetic and GIS tools to construct and test phylogeographic hypotheses. Insights into the evolutionary mechanisms underlying recent divergences can benefit from simultaneously considering diverse types of information to iteratively test and reformulate hypotheses. Our goal is to provide the reader with an introduction to the variety of available tools and their potential application to typical questions in phylogeography with the hope that integrative methods will be more broadly and commonly applied to other biological systems and data sets.
Copyright © 2011 Elsevier Inc. All rights reserved.

Mesh:

Year:  2011        PMID: 21352934     DOI: 10.1016/j.ympev.2011.01.020

Source DB:  PubMed          Journal:  Mol Phylogenet Evol        ISSN: 1055-7903            Impact factor:   4.286


  35 in total

Review 1.  Phenotypes in phylogeography: Species' traits, environmental variation, and vertebrate diversification.

Authors:  Kelly R Zamudio; Rayna C Bell; Nicholas A Mason
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-19       Impact factor: 11.205

2.  Stepped Geomorphology Shaped the Phylogeographic Structure of a Widespread Tree Species (Toxicodendron vernicifluum, Anacardiaceae) in East Asia.

Authors:  Lu Wang; Yao Li; Shuichi Noshiro; Mitsuo Suzuki; Takahisa Arai; Kazutaka Kobayashi; Lei Xie; Mingyue Zhang; Na He; Yanming Fang; Feilong Zhang
Journal:  Front Plant Sci       Date:  2022-06-02       Impact factor: 6.627

3.  Conservation priorities for Prunus africana defined with the aid of spatial analysis of genetic data and climatic variables.

Authors:  Barbara Vinceti; Judy Loo; Hannes Gaisberger; Maarten J van Zonneveld; Silvio Schueler; Heino Konrad; Caroline A C Kadu; Thomas Geburek
Journal:  PLoS One       Date:  2013-03-27       Impact factor: 3.240

4.  Multi-model inference in comparative phylogeography: an integrative approach based on multiple lines of evidence.

Authors:  Rosane G Collevatti; Levi C Terribile; José A F Diniz-Filho; Matheus S Lima-Ribeiro
Journal:  Front Genet       Date:  2015-02-17       Impact factor: 4.599

5.  A global perspective on decadal challenges and priorities in biodiversity informatics.

Authors:  A Townsend Peterson; Jorge Soberón; Leonard Krishtalka
Journal:  BMC Ecol       Date:  2015-05-29       Impact factor: 2.964

6.  Morphometric Analysis of Coptotermes spp. Soldier Caste (Blattodea: Rhinotermitidae) in Indonesia and Evidence of Coptotermes gestroi Extreme Head-Capsule Shapes.

Authors:  Bramantyo Wikantyoso; Shu-Ping Tseng; Setiawan Khoirul Himmi; Sulaeman Yusuf; Tsuyoshi Yoshimura
Journal:  Insects       Date:  2021-05-20       Impact factor: 2.769

7.  The role of glacial cycles in promoting genetic diversity in the Neotropics: the case of cloud forests during the Last Glacial Maximum.

Authors:  Santiago Ramírez-Barahona; Luis E Eguiarte
Journal:  Ecol Evol       Date:  2013-01-25       Impact factor: 2.912

8.  Phylogeography and postglacial expansion of the endangered semi-aquatic mammal Galemys pyrenaicus.

Authors:  Javier Igea; Pere Aymerich; Angel Fernández-González; Jorge González-Esteban; Asunción Gómez; Rocío Alonso; Joaquim Gosálbez; Jose Castresana
Journal:  BMC Evol Biol       Date:  2013-06-06       Impact factor: 3.260

9.  The phylogeographic history of the new world screwworm fly, inferred by approximate bayesian computation analysis.

Authors:  Pablo Fresia; Ana Maria L Azeredo-Espin; Mariana L Lyra
Journal:  PLoS One       Date:  2013-10-02       Impact factor: 3.240

10.  Phylogeographic analysis of the true lemurs (genus Eulemur) underlines the role of river catchments for the evolution of micro-endemism in Madagascar.

Authors:  Matthias Markolf; Peter M Kappeler
Journal:  Front Zool       Date:  2013-11-14       Impact factor: 3.172

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.