Literature DB >> 21350496

A twist on admixture mapping.

Stephen J Chanock.   

Abstract

A new study uses genome-wide SNP genotypes to identify a subset of children undergoing therapy for acute lymphoblastic leukemia that are at increased risk for relapse. Borrowing from the classical approach of admixture mapping, the work shows how genome-wide assessment of genetic ancestry can be used as a biomarker for disease outcome.

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Year:  2011        PMID： 21350496     DOI： 10.1038/ng0311-178

Source DB:  PubMed          Journal:  Nat Genet        ISSN： 1061-4036            Impact factor:   38.330


  15 in total

1.  Survival variability by race and ethnicity in childhood acute lymphoblastic leukemia.

Authors:  Nina S Kadan-Lottick; Kirsten K Ness; Smita Bhatia; James G Gurney
Journal:  JAMA       Date:  2003-10-15       Impact factor: 56.272

2.  Populations of hybrid origin as source material for the detection of linkage.

Authors:  D C RIFE
Journal:  Am J Hum Genet       Date:  1954-03       Impact factor: 11.025

3.  A high-density admixture map for disease gene discovery in african americans.

Authors:  Michael W Smith; Nick Patterson; James A Lautenberger; Ann L Truelove; Gavin J McDonald; Alicja Waliszewska; Bailey D Kessing; Michael J Malasky; Charles Scafe; Ernest Le; Philip L De Jager; Andre A Mignault; Zeng Yi; Guy De The; Myron Essex; Jean-Louis Sankale; Jason H Moore; Kwabena Poku; John P Phair; James J Goedert; David Vlahov; Scott M Williams; Sarah A Tishkoff; Cheryl A Winkler; Francisco M De La Vega; Trevor Woodage; John J Sninsky; David A Hafler; David Altshuler; Dennis A Gilbert; Stephen J O'Brien; David Reich
Journal:  Am J Hum Genet       Date:  2004-04-14       Impact factor: 11.025

4.  Principal components analysis corrects for stratification in genome-wide association studies.

Authors:  Alkes L Price; Nick J Patterson; Robert M Plenge; Michael E Weinblatt; Nancy A Shadick; David Reich
Journal:  Nat Genet       Date:  2006-07-23       Impact factor: 38.330

5.  A genomewide single-nucleotide-polymorphism panel with high ancestry information for African American admixture mapping.

Authors:  Chao Tian; David A Hinds; Russell Shigeta; Rick Kittles; Dennis G Ballinger; Michael F Seldin
Journal:  Am J Hum Genet       Date:  2006-08-15       Impact factor: 11.025

6.  Ethnic-specific differences in bronchodilator responsiveness among African Americans, Puerto Ricans, and Mexicans with asthma.

Authors:  Mariam Naqvi; Shannon Thyne; Shweta Choudhry; Hui-ju Tsai; Daniel Navarro; Richard A Castro; Sylvette Nazario; Jose R Rodriguez-Santana; Jesus Casal; Alfonso Torres; Rocio Chapela; H Geoffrey Watson; Kelley Meade; Michael LeNoir; Pedro C Avila; William Rodriguez-Cintron; Esteban González Burchard
Journal:  J Asthma       Date:  2007-10       Impact factor: 2.515

7.  A genomewide admixture mapping panel for Hispanic/Latino populations.

Authors:  Xianyun Mao; Abigail W Bigham; Rui Mei; Gerardo Gutierrez; Ken M Weiss; Tom D Brutsaert; Fabiola Leon-Velarde; Lorna G Moore; Enrique Vargas; Paul M McKeigue; Mark D Shriver; Esteban J Parra
Journal:  Am J Hum Genet       Date:  2007-04-20       Impact factor: 11.025

8.  Recent genetic selection in the ancestral admixture of Puerto Ricans.

Authors:  Hua Tang; Shweta Choudhry; Rui Mei; Martin Morgan; William Rodriguez-Cintron; Esteban González Burchard; Neil J Risch
Journal:  Am J Hum Genet       Date:  2007-08-01       Impact factor: 11.025

9.  Leveraging genetic variability across populations for the identification of causal variants.

Authors:  Noah Zaitlen; Bogdan Paşaniuc; Tom Gur; Elad Ziv; Eran Halperin
Journal:  Am J Hum Genet       Date:  2010-01       Impact factor: 11.025

Review 10.  Admixture mapping comes of age.

Authors:  Cheryl A Winkler; George W Nelson; Michael W Smith
Journal:  Annu Rev Genomics Hum Genet       Date:  2010       Impact factor: 8.929
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  5 in total

1.  Policy-ready science.

Authors: 
Journal:  Nat Genet       Date:  2011-07-27       Impact factor: 38.330

Review 2.  Current status of genome-wide association studies in cancer.

Authors:  Charles C Chung; Stephen J Chanock
Journal:  Hum Genet       Date:  2011-06-16       Impact factor: 4.132

3.  Dissecting ancestry genomic background in substance dependence genome-wide association studies.

Authors:  Renato Polimanti; Can Yang; Hongyu Zhao; Joel Gelernter
Journal:  Pharmacogenomics       Date:  2015-08-12       Impact factor: 2.533

4.  Genetic ancestry-smoking interactions and lung function in African Americans: a cohort study.

Authors:  Melinda C Aldrich; Rajesh Kumar; Laura A Colangelo; L Keoki Williams; Saunak Sen; Stephen B Kritchevsky; Bernd Meibohm; Joshua Galanter; Donglei Hu; Christopher R Gignoux; Yongmei Liu; Tamara B Harris; Elad Ziv; Joseph Zmuda; Melissa Garcia; Tennille S Leak; Marilyn G Foreman; Lewis J Smith; Myriam Fornage; Kiang Liu; Esteban G Burchard
Journal:  PLoS One       Date:  2012-06-21       Impact factor: 3.240

5.  Genetic ancestry is associated with colorectal adenomas and adenocarcinomas in Latino populations.

Authors:  Gustavo Hernandez-Suarez; Maria Carolina Sanabria; Marta Serrano; Oscar F Herran; Jesus Perez; Jose L Plata; Jovanny Zabaleta; Albert Tenesa
Journal:  Eur J Hum Genet       Date:  2014-02-12       Impact factor: 4.246
  5 in total

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