| Literature DB >> 21349275 |
Yunling Liu1, Lan Tao, Jianjun Lu, Shuo Xu, Qin Ma, Qingling Duan.
Abstract
In this paper, we propose a novel force field parameter optimization method based on LSSVR and optimize the torsion energy parameters of ECEPP force field. In this method force field parameter optimization problem is turned into a support vector regression problem. Protein samples for regression model training are chosen from Protein Data Bank. The experiments show that the optimized force-field parameters make both α-helix and β-hairpin structures more consistent with the experimental implications than the original parameters. CrownMesh:
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Year: 2011 PMID: 21349275 DOI: 10.1016/j.febslet.2011.02.019
Source DB: PubMed Journal: FEBS Lett ISSN: 0014-5793 Impact factor: 4.124