Literature DB >> 21344599

Native and unfolded states of phosphoglycerate kinase studied by single-molecule FRET.

Tobias Rosenkranz1, Ramona Schlesinger, Matteo Gabba, Jörg Fitter.   

Abstract

Single-molecule Förster resonance energy transfer (FRET) measurements with phosphoglycerate kinase from yeast were performed at different concentrations of guanidine hydrochloride. From these steady-state measurements we obtained FRET efficiency histograms characterizing structural properties of individual proteins at different stages between the native and the fully unfolded state. Native proteins exhibit a slightly more expanded structure under buffer conditions without denaturant as compared to conditions with denaturant. At 0.5 M GndHCl an unfolded state population that exhibits a significantly expanded structure as compared to the native state, emerges. The unfolded state is characterized by a pronounced broadening of the efficiency distribution, which indicates a large structural and/or dynamical heterogeneity within the population. At high denaturant concentrations, well above the unfolding transition at C(1/2)~0.7 M, we observe a progressive expansion of the protein structure, namely globule-coil transition.
Copyright © 2011 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

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Year:  2010        PMID: 21344599     DOI: 10.1002/cphc.201000701

Source DB:  PubMed          Journal:  Chemphyschem        ISSN: 1439-4235            Impact factor:   3.102


  8 in total

1.  Functional domain motions in proteins on the ~1-100 ns timescale: comparison of neutron spin-echo spectroscopy of phosphoglycerate kinase with molecular-dynamics simulation.

Authors:  N Smolin; R Biehl; G R Kneller; D Richter; J C Smith
Journal:  Biophys J       Date:  2012-03-06       Impact factor: 4.033

2.  Conformational state distributions and catalytically relevant dynamics of a hinge-bending enzyme studied by single-molecule FRET and a coarse-grained simulation.

Authors:  Matteo Gabba; Simón Poblete; Tobias Rosenkranz; Alexandros Katranidis; Daryan Kempe; Tina Züchner; Roland G Winkler; Gerhard Gompper; Jörg Fitter
Journal:  Biophys J       Date:  2014-10-21       Impact factor: 4.033

3.  Dodine as a transparent protein denaturant for circular dichroism and infrared studies.

Authors:  Drishti Guin; Kori Sye; Kapil Dave; Martin Gruebele
Journal:  Protein Sci       Date:  2016-03-21       Impact factor: 6.725

4.  Conformational properties of the unfolded state of Im7 in nondenaturing conditions.

Authors:  Clare L Pashley; Gareth J Morgan; Arnout P Kalverda; Gary S Thompson; Colin Kleanthous; Sheena E Radford
Journal:  J Mol Biol       Date:  2011-12-28       Impact factor: 5.469

5.  Atomistic structural ensemble refinement reveals non-native structure stabilizes a sub-millisecond folding intermediate of CheY.

Authors:  Jade Shi; R Paul Nobrega; Christian Schwantes; Sagar V Kathuria; Osman Bilsel; C Robert Matthews; T J Lane; Vijay S Pande
Journal:  Sci Rep       Date:  2017-03-08       Impact factor: 4.379

6.  Mapping Multiple Distances in a Multidomain Protein for the Identification of Folding Intermediates.

Authors:  Michele Cerminara; Antonie Schöne; Ilona Ritter; Matteo Gabba; Jörg Fitter
Journal:  Biophys J       Date:  2019-12-18       Impact factor: 4.033

7.  Conformational Switching in Bcl-xL: Enabling Non-Canonic Inhibition of Apoptosis Involves Multiple Intermediates and Lipid Interactions.

Authors:  Victor Vasquez-Montes; Alexander Kyrychenko; Mauricio Vargas-Uribe; Mykola V Rodnin; Alexey S Ladokhin
Journal:  Cells       Date:  2020-02-26       Impact factor: 6.600

8.  Impact of Molecule Concentration, Diffusion Rates and Surface Passivation on Single-Molecule Fluorescence Studies in Solution.

Authors:  Olessya Yukhnovets; Henning Höfig; Nuno Bustorff; Alexandros Katranidis; Jörg Fitter
Journal:  Biomolecules       Date:  2022-03-18
  8 in total

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