Literature DB >> 21342783

An expanding universe of small proteins.

Errett C Hobbs1, Fanette Fontaine, Xuefeng Yin, Gisela Storz.   

Abstract

Historically, small proteins (sproteins) of less than 50 amino acids, in their final processed forms or genetically encoded as such, have been understudied. However, both serendipity and more recent focused efforts have led to the identification of a number of new sproteins in both Gram-negative and Gram-positive bacteria. Increasing evidence demonstrates that sproteins participate in a wide array of cellular processes and exhibit great diversity in their mechanisms of action, yet general principles of sprotein function are emerging. This review highlights examples of sproteins that participate in cell signaling, act as antibiotics and toxins, and serve as structural proteins. We also describe roles for sproteins in detecting and altering membrane features, acting as chaperones, and regulating the functions of larger proteins. Published by Elsevier Ltd.

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Year:  2011        PMID: 21342783      PMCID: PMC3079058          DOI: 10.1016/j.mib.2011.01.007

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN: 1369-5274            Impact factor:   7.934


  44 in total

Review 1.  Mode of action of lipid II-targeting lantibiotics.

Authors:  R Bauer; L M T Dicks
Journal:  Int J Food Microbiol       Date:  2005-05-25       Impact factor: 5.277

2.  Small untranslated RNA antitoxin in Bacillus subtilis.

Authors:  Jessica M Silvaggi; John B Perkins; Richard Losick
Journal:  J Bacteriol       Date:  2005-10       Impact factor: 3.490

3.  Peptide inhibitor of cytokinesis during sporulation in Bacillus subtilis.

Authors:  Aaron A Handler; Joo Eun Lim; Richard Losick
Journal:  Mol Microbiol       Date:  2008-02-19       Impact factor: 3.501

4.  A peptide signal for adapter protein-mediated degradation by the AAA+ protease ClpCP.

Authors:  Peter Prepiak; David Dubnau
Journal:  Mol Cell       Date:  2007-06-08       Impact factor: 17.970

5.  B1500, a small membrane protein, connects the two-component systems EvgS/EvgA and PhoQ/PhoP in Escherichia coli.

Authors:  Yoko Eguchi; Junji Itou; Masatake Yamane; Ryo Demizu; Fumiyuki Yamato; Ario Okada; Hirotada Mori; Akinori Kato; Ryutaro Utsumi
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-12       Impact factor: 11.205

6.  Identification of novel cytolytic peptides as key virulence determinants for community-associated MRSA.

Authors:  Rong Wang; Kevin R Braughton; Dorothee Kretschmer; Thanh-Huy L Bach; Shu Y Queck; Min Li; Adam D Kennedy; David W Dorward; Seymour J Klebanoff; Andreas Peschel; Frank R DeLeo; Michael Otto
Journal:  Nat Med       Date:  2007-11-11       Impact factor: 53.440

7.  Peptide-assisted degradation of the Salmonella MgtC virulence factor.

Authors:  Eric Alix; Anne-Béatrice Blanc-Potard
Journal:  EMBO J       Date:  2008-01-17       Impact factor: 11.598

8.  Structure of the cytochrome b6f complex: quinone analogue inhibitors as ligands of heme cn.

Authors:  E Yamashita; H Zhang; W A Cramer
Journal:  J Mol Biol       Date:  2007-04-12       Impact factor: 5.469

9.  A genome-wide survey of short coding sequences in streptococci.

Authors:  Mariam Ibrahim; Pierre Nicolas; Philippe Bessières; Alexander Bolotin; Véronique Monnet; Rozenn Gardan
Journal:  Microbiology (Reading)       Date:  2007-11       Impact factor: 2.777

10.  A dual function for a bacterial small RNA: SgrS performs base pairing-dependent regulation and encodes a functional polypeptide.

Authors:  Caryn S Wadler; Carin K Vanderpool
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-27       Impact factor: 11.205

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  56 in total

1.  Conserved small protein associates with the multidrug efflux pump AcrB and differentially affects antibiotic resistance.

Authors:  Errett C Hobbs; Xuefeng Yin; Brian J Paul; Jillian L Astarita; Gisela Storz
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-24       Impact factor: 11.205

2.  Membrane localization of small proteins in Escherichia coli.

Authors:  Fanette Fontaine; Ryan T Fuchs; Gisela Storz
Journal:  J Biol Chem       Date:  2011-07-21       Impact factor: 5.157

Review 3.  Spore formation in Bacillus subtilis.

Authors:  Irene S Tan; Kumaran S Ramamurthi
Journal:  Environ Microbiol Rep       Date:  2013-12-17       Impact factor: 3.541

Review 4.  Emerging evidence for functional peptides encoded by short open reading frames.

Authors:  Shea J Andrews; Joseph A Rothnagel
Journal:  Nat Rev Genet       Date:  2014-02-11       Impact factor: 53.242

Review 5.  Identifying (non-)coding RNAs and small peptides: challenges and opportunities.

Authors:  Andrea Pauli; Eivind Valen; Alexander F Schier
Journal:  Bioessays       Date:  2014-10-24       Impact factor: 4.345

6.  Complete Genome Sequence of Bifidobacterium longum GT15: Identification and Characterization of Unique and Global Regulatory Genes.

Authors:  Natalia V Zakharevich; Olga V Averina; Ksenia M Klimina; Anna V Kudryavtseva; Artem S Kasianov; Vsevolod J Makeev; Valery N Danilenko
Journal:  Microb Ecol       Date:  2015-04-17       Impact factor: 4.552

7.  OCCAM: prediction of small ORFs in bacterial genomes by means of a target-decoy database approach and machine learning techniques.

Authors:  Fabio R Cerqueira; Ana Tereza Ribeiro Vasconcelos
Journal:  Database (Oxford)       Date:  2020-01-01       Impact factor: 3.451

8.  The 216-bp marB gene of the marRAB operon in Escherichia coli encodes a periplasmic protein which reduces the transcription rate of marA.

Authors:  Laura Vinué; Laura M McMurry; Stuart B Levy
Journal:  FEMS Microbiol Lett       Date:  2013-06-26       Impact factor: 2.742

9.  The β-lactam resistance protein Blr, a small membrane polypeptide, is a component of the Escherichia coli cell division machinery.

Authors:  Gouzel Karimova; Marilyne Davi; Daniel Ladant
Journal:  J Bacteriol       Date:  2012-08-10       Impact factor: 3.490

10.  Regulation of gene expression by macrolide-induced ribosomal frameshifting.

Authors:  Pulkit Gupta; Krishna Kannan; Alexander S Mankin; Nora Vázquez-Laslop
Journal:  Mol Cell       Date:  2013-11-14       Impact factor: 17.970

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