Literature DB >> 21342537

Computational and phylogenetic validation of nematode horizontal gene transfer.

Elizabeth H Scholl1, David McK Bird.   

Abstract

Sequencing of expressed genes has shown that nematodes, particularly the plant-parasitic nematodes, have genes purportedly acquired from other kingdoms by horizontal gene transfer. The prevailing orthodoxy is that such transfer has been a driving force in the evolution of niche specificity, and a recent paper in BMC Evolutionary Biology that presents a detailed phylogenetic analysis of cellulase genes in the free-living nematode Pristionchus pacificus at the species, genus and family levels substantiates this hypothesis.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21342537      PMCID: PMC3042989          DOI: 10.1186/1741-7007-9-9

Source DB:  PubMed          Journal:  BMC Biol        ISSN: 1741-7007            Impact factor:   7.431


  7 in total

1.  Multiple lateral gene transfers and duplications have promoted plant parasitism ability in nematodes.

Authors:  Etienne G J Danchin; Marie-Noëlle Rosso; Paulo Vieira; Janice de Almeida-Engler; Pedro M Coutinho; Bernard Henrissat; Pierre Abad
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-27       Impact factor: 11.205

2.  The Pristionchus pacificus genome provides a unique perspective on nematode lifestyle and parasitism.

Authors:  Christoph Dieterich; Sandra W Clifton; Lisa N Schuster; Asif Chinwalla; Kimberly Delehaunty; Iris Dinkelacker; Lucinda Fulton; Robert Fulton; Jennifer Godfrey; Pat Minx; Makedonka Mitreva; Waltraud Roeseler; Huiyu Tian; Hanh Witte; Shiaw-Pyng Yang; Richard K Wilson; Ralf J Sommer
Journal:  Nat Genet       Date:  2008-09-21       Impact factor: 38.330

3.  Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism.

Authors:  Charles H Opperman; David M Bird; Valerie M Williamson; Dan S Rokhsar; Mark Burke; Jonathan Cohn; John Cromer; Steve Diener; Jim Gajan; Steve Graham; T D Houfek; Qingli Liu; Therese Mitros; Jennifer Schaff; Reenah Schaffer; Elizabeth Scholl; Bryon R Sosinski; Varghese P Thomas; Eric Windham
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-22       Impact factor: 11.205

4.  Endogenous cellulases in animals: isolation of beta-1, 4-endoglucanase genes from two species of plant-parasitic cyst nematodes.

Authors:  G Smant; J P Stokkermans; Y Yan; J M de Boer; T J Baum; X Wang; R S Hussey; F J Gommers; B Henrissat; E L Davis; J Helder; A Schots; J Bakker
Journal:  Proc Natl Acad Sci U S A       Date:  1998-04-28       Impact factor: 11.205

Review 5.  The genomes of root-knot nematodes.

Authors:  David McK Bird; Valerie M Williamson; Pierre Abad; James McCarter; Etienne G J Danchin; Philippe Castagnone-Sereno; Charles H Opperman
Journal:  Annu Rev Phytopathol       Date:  2009       Impact factor: 13.078

6.  Horizontal gene transfer of microbial cellulases into nematode genomes is associated with functional assimilation and gene turnover.

Authors:  Werner E Mayer; Lisa N Schuster; Gabi Bartelmes; Christoph Dieterich; Ralf J Sommer
Journal:  BMC Evol Biol       Date:  2011-01-13       Impact factor: 3.260

7.  Horizontally transferred genes in plant-parasitic nematodes: a high-throughput genomic approach.

Authors:  Elizabeth H Scholl; Jeffrey L Thorne; James P McCarter; David Mck Bird
Journal:  Genome Biol       Date:  2003-05-19       Impact factor: 13.583

  7 in total
  5 in total

Review 1.  Horizontal gene transfer in plants.

Authors:  Caihua Gao; Xiaodong Ren; Annaliese S Mason; Honglei Liu; Meili Xiao; Jiana Li; Donghui Fu
Journal:  Funct Integr Genomics       Date:  2013-10-17       Impact factor: 3.410

Review 2.  Nematode-bacterium symbioses--cooperation and conflict revealed in the "omics" age.

Authors:  Kristen E Murfin; Adler R Dillman; Jeremy M Foster; Silvia Bulgheresi; Barton E Slatko; Paul W Sternberg; Heidi Goodrich-Blair
Journal:  Biol Bull       Date:  2012-08       Impact factor: 1.818

3.  Diversity of bacteria carried by pinewood nematode in USA and phylogenetic comparison with isolates from other countries.

Authors:  Diogo Neves Proença; Luís Fonseca; Thomas O Powers; Isabel M O Abrantes; Paula V Morais
Journal:  PLoS One       Date:  2014-08-15       Impact factor: 3.240

Review 4.  Understanding pine wilt disease: roles of the pine endophytic bacteria and of the bacteria carried by the disease-causing pinewood nematode.

Authors:  Diogo N Proença; Gregor Grass; Paula V Morais
Journal:  Microbiologyopen       Date:  2016-10-26       Impact factor: 3.139

5.  Metagenomic analysis of the pinewood nematode microbiome reveals a symbiotic relationship critical for xenobiotics degradation.

Authors:  Xin-Yue Cheng; Xue-Liang Tian; Yun-Sheng Wang; Ren-Miao Lin; Zhen-Chuan Mao; Nansheng Chen; Bing-Yan Xie
Journal:  Sci Rep       Date:  2013       Impact factor: 4.379

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.