Literature DB >> 21340075

Temperature accelerated Monte Carlo (TAMC): a method for sampling the free energy surface of non-analytical collective variables.

Giovanni Ciccotti1, Simone Meloni.   

Abstract

We introduce a new method to simulate the physics of rare events. The method, an extension of the Temperature Accelerated Molecular Dynamics, comes in use when the collective variables introduced to characterize the rare events are either non-analytical or so complex that computing their derivative is not practical. We illustrate the functioning of the method by studying the homogeneous crystallization in a sample of Lennard-Jones particles. The process is studied by introducing a new collective variable that we call Effective Nucleus Size N. We have computed the free energy barriers and the size of critical nucleus, which result in agreement with data available in the literature. We have also performed simulations in the liquid domain of the phase diagram. We found a free energy curve monotonically growing with the nucleus size, consistent with the liquid domain.

Year:  2011        PMID: 21340075     DOI: 10.1039/c0cp01335h

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  5 in total

1.  Order-parameter-aided temperature-accelerated sampling for the exploration of crystal polymorphism and solid-liquid phase transitions.

Authors:  Tang-Qing Yu; Pei-Yang Chen; Ming Chen; Amit Samanta; Eric Vanden-Eijnden; Mark Tuckerman
Journal:  J Chem Phys       Date:  2014-06-07       Impact factor: 3.488

2.  Computational study of peptide permeation through membrane: Searching for hidden slow variables.

Authors:  Alfredo E Cardenas; Ron Elber
Journal:  Mol Phys       Date:  2013-11-25       Impact factor: 1.962

3.  Wetting and cavitation pathways on nanodecorated surfaces.

Authors:  Matteo Amabili; Emanuele Lisi; Alberto Giacomello; Carlo Massimo Casciola
Journal:  Soft Matter       Date:  2016-03-28       Impact factor: 3.679

4.  Double Life of Methanol: Experimental Studies and Nonequilibrium Molecular-Dynamics Simulation of Methanol Effects on Methane-Hydrate Nucleation.

Authors:  Marco Lauricella; Mohammad Reza Ghaani; Prithwish K Nandi; Simone Meloni; Bjorn Kvamme; Niall J English
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2022-03-24       Impact factor: 4.126

5.  Conformational changes in acetylcholine binding protein investigated by temperature accelerated molecular dynamics.

Authors:  Zeynab Mohammad Hosseini Naveh; Therese E Malliavin; Luca Maragliano; Grazia Cottone; Giovanni Ciccotti
Journal:  PLoS One       Date:  2014-02-13       Impact factor: 3.240

  5 in total

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