Literature DB >> 21337703

SearchGUI: An open-source graphical user interface for simultaneous OMSSA and X!Tandem searches.

Marc Vaudel1, Harald Barsnes, Frode S Berven, Albert Sickmann, Lennart Martens.   

Abstract

The identification of proteins by mass spectrometry is a standard technique in the field of proteomics, relying on search engines to perform the identifications of the acquired spectra. Here, we present a user-friendly, lightweight and open-source graphical user interface called SearchGUI (http://searchgui.googlecode.com), for configuring and running the freely available OMSSA (open mass spectrometry search algorithm) and X!Tandem search engines simultaneously. Freely available under the permissible Apache2 license, SearchGUI is supported on Windows, Linux and OSX.
Copyright © 2011 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

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Year:  2011        PMID： 21337703     DOI： 10.1002/pmic.201000595

Source DB:  PubMed          Journal:  Proteomics        ISSN： 1615-9853            Impact factor:   3.984


  134 in total

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3.  Paleoproteomic study of the Iceman's brain tissue.

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4.  Tyr728 in the kinase domain of the murine kinase suppressor of RAS 1 regulates binding and activation of the mitogen-activated protein kinase kinase.

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5.  Deep transcriptome annotation enables the discovery and functional characterization of cryptic small proteins.

Authors:  Sondos Samandi; Annie V Roy; Vivian Delcourt; Jean-François Lucier; Jules Gagnon; Maxime C Beaudoin; Benoît Vanderperre; Marc-André Breton; Julie Motard; Jean-François Jacques; Mylène Brunelle; Isabelle Gagnon-Arsenault; Isabelle Fournier; Aida Ouangraoua; Darel J Hunting; Alan A Cohen; Christian R Landry; Michelle S Scott; Xavier Roucou
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6.  Production of Hypoallergenic Antibacterial Peptides from Defatted Soybean Meal in Membrane Bioreactor: A Bioprocess Engineering Study with Comprehensive Product Characterization.

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Journal:  Food Technol Biotechnol       Date:  2017-09       Impact factor: 3.918

7.  A-to-I RNA Editing Contributes to Proteomic Diversity in Cancer.

Authors:  Xinxin Peng; Xiaoyan Xu; Yumeng Wang; David H Hawke; Shuangxing Yu; Leng Han; Zhicheng Zhou; Kamalika Mojumdar; Kang Jin Jeong; Marilyne Labrie; Yiu Huen Tsang; Minying Zhang; Yiling Lu; Patrick Hwu; Kenneth L Scott; Han Liang; Gordon B Mills
Journal:  Cancer Cell       Date:  2018-04-26       Impact factor: 31.743

8.  The multidrug resistance pump ABCB1 is a substrate for the ubiquitin ligase NEDD4-1.

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Journal:  Mol Membr Biol       Date:  2015-05-26       Impact factor: 2.857

9.  Preprocessing significantly improves the peptide/protein identification sensitivity of high-resolution isobarically labeled tandem mass spectrometry data.

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Review 10.  A review of methods for interpretation of glycopeptide tandem mass spectral data.

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Journal:  Glycoconj J       Date:  2015-11-26       Impact factor: 2.916
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