Literature DB >> 21336521

Almost lost in translation. Cryo-EM of a dynamic macromolecular complex: the ribosome.

Mikel Valle1.   

Abstract

Ribosomes are dynamic biological machines that perform numerous tasks during translation, the biosynthesis of proteins. Translocation, the movement of transfer RNAs (tRNAs) and messenger RNA (mRNA) to progress in the reading frame of codons in the mRNA, takes place after the addition of each amino acid. This process involves large ribosome conformational changes, where tRNAs proceed through intermediate states. The structural characterization of these translocation intermediates has remained elusive. Cryo-electron microscopy (cryo-EM) produces three-dimensional averages, and translocating ribosomes poise distinct conformational states, and hence, structurally heterogeneous populations. During the last decade, the quest for visualization of translocation intermediates has progressed together with the development of classification tools in cryo-EM. Some of these new tools have recently been tested in ribosomal translocation, uncovering a clearer picture of the process. This success goes along with the latest advances in cryo-EM and illustrates how the technique offers multiple possibilities for studying macromolecular complexes engaged in dynamic reactions.

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Year:  2011        PMID: 21336521     DOI: 10.1007/s00249-011-0683-6

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  37 in total

1.  The complete atomic structure of the large ribosomal subunit at 2.4 A resolution.

Authors:  N Ban; P Nissen; J Hansen; P B Moore; T A Steitz
Journal:  Science       Date:  2000-08-11       Impact factor: 47.728

2.  EF-G-independent reactivity of a pre-translocation-state ribosome complex with the aminoacyl tRNA substrate puromycin supports an intermediate (hybrid) state of tRNA binding.

Authors:  Divya Sharma; Daniel R Southworth; Rachel Green
Journal:  RNA       Date:  2004-01       Impact factor: 4.942

3.  Locking and unlocking of ribosomal motions.

Authors:  Mikel Valle; Andrey Zavialov; Jayati Sengupta; Urmila Rawat; Måns Ehrenberg; Joachim Frank
Journal:  Cell       Date:  2003-07-11       Impact factor: 41.582

4.  Ab initio structure determination from electron microscopic images of single molecules coexisting in different functional states.

Authors:  Dominika Elmlund; Ralph Davis; Hans Elmlund
Journal:  Structure       Date:  2010-07-14       Impact factor: 5.006

5.  Unsupervised classification of single particles by cluster tracking in multi-dimensional space.

Authors:  Jie Fu; Haixiao Gao; Joachim Frank
Journal:  J Struct Biol       Date:  2006-07-21       Impact factor: 2.867

Review 6.  A structural understanding of the dynamic ribosome machine.

Authors:  Thomas A Steitz
Journal:  Nat Rev Mol Cell Biol       Date:  2008-03       Impact factor: 94.444

7.  Experimental verification of conformational variation of human fatty acid synthase as predicted by normal mode analysis.

Authors:  Jacob Brink; Steven J Ludtke; Yifei Kong; Salih J Wakil; Jianpeng Ma; Wah Chiu
Journal:  Structure       Date:  2004-02       Impact factor: 5.006

8.  Visualization of the eEF2-80S ribosome transition-state complex by cryo-electron microscopy.

Authors:  Jayati Sengupta; Jakob Nilsson; Richard Gursky; Morten Kjeldgaard; Poul Nissen; Joachim Frank
Journal:  J Mol Biol       Date:  2008-07-11       Impact factor: 5.469

9.  Automated multi-model reconstruction from single-particle electron microscopy data.

Authors:  Maxim Shatsky; Richard J Hall; Eva Nogales; Jitendra Malik; Steven E Brenner
Journal:  J Struct Biol       Date:  2010-01-18       Impact factor: 2.867

10.  Visualization of the hybrid state of tRNA binding promoted by spontaneous ratcheting of the ribosome.

Authors:  Xabier Agirrezabala; Jianlin Lei; Julie L Brunelle; Rodrigo F Ortiz-Meoz; Rachel Green; Joachim Frank
Journal:  Mol Cell       Date:  2008-10-24       Impact factor: 17.970

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  3 in total

Review 1.  Generalized single-particle cryo-EM--a historical perspective.

Authors:  Joachim Frank
Journal:  Microscopy (Oxf)       Date:  2015-11-12       Impact factor: 1.571

2.  Model of ribosome translation and mRNA unwinding.

Authors:  Ping Xie
Journal:  Eur Biophys J       Date:  2012-12-25       Impact factor: 1.733

3.  Dynamics of tRNA translocation, mRNA translocation and tRNA dissociation during ribosome translation through mRNA secondary structures.

Authors:  Ping Xie
Journal:  Eur Biophys J       Date:  2014-04-22       Impact factor: 1.733

  3 in total

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