Literature DB >> 21333652

Electrostatic interactions mediate binding of obscurin to small ankyrin 1: biochemical and molecular modeling studies.

Ben Busby1, Taiji Oashi, Chris D Willis, Maegen A Ackermann, Aikaterini Kontrogianni-Konstantopoulos, Alexander D Mackerell, Robert J Bloch.   

Abstract

Small ankyrin 1 (sAnk1; also known as Ank1.5) is an integral protein of the sarcoplasmic reticulum (SR) in skeletal and cardiac muscle cells, where it is thought to bind to the C-terminal region of obscurin, a large modular protein that surrounds the contractile apparatus. Using fusion proteins in vitro, in combination with site-directed mutagenesis and surface plasmon resonance measurements, we previously showed that the binding site on sAnk1 for obscurin consists, in part, of six lysine and arginine residues. Here we show that four charged residues in the high-affinity binding site on obscurin for sAnk1 (between residues 6316 and 6345), consisting of three glutamates and a lysine, are necessary, but not sufficient, for this site on obscurin to bind to sAnk1 with high affinity. We also identify specific complementary mutations in sAnk1 that can partially or completely compensate for the changes in binding caused by charge-switching mutations in obscurin. We used molecular modeling to develop structural models of residues 6322-6339 of obscurin bound to sAnk1. The models, based on a combination of Brownian and molecular dynamics simulations, predict that the binding site on sAnk1 for obscurin is organized as two ankyrin-like repeats, with the last α-helical segment oriented at an angle to nearby helices, allowing lysine 6338 of obscurin to form an ionic interaction with aspartate 111 of sAnk1. This prediction was validated by double-mutant cycle experiments. Our results are consistent with a model in which electrostatic interactions between specific pairs of side chains on obscurin and sAnk1 promote binding and complex formation.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21333652      PMCID: PMC3367564          DOI: 10.1016/j.jmb.2011.01.053

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  43 in total

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Journal:  J Comput Chem       Date:  2009-07-30       Impact factor: 3.376

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Journal:  Gene       Date:  2002-01-09       Impact factor: 3.688

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Journal:  J Cell Biol       Date:  1997-02-10       Impact factor: 10.539

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  9 in total

Review 1.  Organization of junctional sarcoplasmic reticulum proteins in skeletal muscle fibers.

Authors:  Virginia Barone; Davide Randazzo; Valeria Del Re; Vincenzo Sorrentino; Daniela Rossi
Journal:  J Muscle Res Cell Motil       Date:  2015-09-15       Impact factor: 2.698

2.  Association of ANK1 variants with new-onset type 2 diabetes in a Han Chinese population from northeast China.

Authors:  Lulu Sun; Xuelong Zhang; Tongtong Wang; Meijun Chen; Hong Qiao
Journal:  Exp Ther Med       Date:  2017-08-02       Impact factor: 2.447

3.  Hydrophobic residues in small ankyrin 1 participate in binding to obscurin.

Authors:  Chris D Willis; Taiji Oashi; Ben Busby; Alexander D Mackerell; Robert J Bloch
Journal:  Mol Membr Biol       Date:  2012-03       Impact factor: 2.857

Review 4.  Obscure functions: the location-function relationship of obscurins.

Authors:  Heather R Manring; Olivia A Carter; Maegen A Ackermann
Journal:  Biophys Rev       Date:  2017-03-29

5.  Obscurin is a semi-flexible molecule in solution.

Authors:  Jacob A Whitley; Aidan M Ex-Willey; Daniel R Marzolf; Maegen A Ackermann; Anthony L Tongen; Oleksandr Kokhan; Nathan T Wright
Journal:  Protein Sci       Date:  2019-02-06       Impact factor: 6.725

Review 6.  Obscurins: unassuming giants enter the spotlight.

Authors:  Nicole A Perry; Maegen A Ackermann; Marey Shriver; Li-Yen R Hu; Aikaterini Kontrogianni-Konstantopoulos
Journal:  IUBMB Life       Date:  2013-03-20       Impact factor: 3.885

7.  Obscurin and KCTD6 regulate cullin-dependent small ankyrin-1 (sAnk1.5) protein turnover.

Authors:  Stephan Lange; Sue Perera; Phildrich Teh; Ju Chen
Journal:  Mol Biol Cell       Date:  2012-05-09       Impact factor: 4.138

8.  Obscurins: Goliaths and Davids take over non-muscle tissues.

Authors:  Maegen A Ackermann; Marey Shriver; Nicole A Perry; Li-Yen R Hu; Aikaterini Kontrogianni-Konstantopoulos
Journal:  PLoS One       Date:  2014-02-06       Impact factor: 3.240

9.  The effect of macromolecular crowding on the electrostatic component of barnase-barstar binding: a computational, implicit solvent-based study.

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  9 in total

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