Literature DB >> 21331091

The pleiotropic structure of the genotype-phenotype map: the evolvability of complex organisms.

Günter P Wagner1, Jianzhi Zhang.   

Abstract

It was first noticed 100 years ago that mutations tend to affect more than one phenotypic characteristic, a phenomenon that was called 'pleiotropy'. Because pleiotropy was found so frequently, the notion arose that pleiotropy is 'universal'. However, quantitative estimates of pleiotropy have not been available until recently. These estimates show that pleiotropy is highly restricted and are more in line with the notion of variational modularity than with universal pleiotropy. This finding has major implications for the evolvability of complex organisms and the mapping of disease-causing mutations.

Mesh:

Year:  2011        PMID: 21331091     DOI: 10.1038/nrg2949

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  50 in total

1.  Is modularity necessary for evolvability? Remarks on the relationship between pleiotropy and evolvability.

Authors:  Thomas F Hansen
Journal:  Biosystems       Date:  2003-05       Impact factor: 1.973

2.  Fisher's model and the genomics of adaptation: restricted pleiotropy, heterogenous mutation, and parallel evolution.

Authors:  Luis-Miguel Chevin; Guillaume Martin; Thomas Lenormand
Journal:  Evolution       Date:  2010-11       Impact factor: 3.694

3.  Fisher's microscope and Haldane's ellipse.

Authors:  D Waxman; J J Welch
Journal:  Am Nat       Date:  2005-08-05       Impact factor: 3.926

Review 4.  A general multivariate extension of Fisher's geometrical model and the distribution of mutation fitness effects across species.

Authors:  Guillaume Martin; Thomas Lenormand
Journal:  Evolution       Date:  2006-05       Impact factor: 3.694

5.  The human disease network.

Authors:  Kwang-Il Goh; Michael E Cusick; David Valle; Barton Childs; Marc Vidal; Albert-László Barabási
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-14       Impact factor: 11.205

6.  A preliminary analysis of gene pleiotropy estimated from protein sequences.

Authors:  Zhixi Su; Yanwu Zeng; Xun Gu
Journal:  J Exp Zool B Mol Dev Evol       Date:  2010-03-15       Impact factor: 2.656

Review 7.  The genetics of quantitative traits: challenges and prospects.

Authors:  Trudy F C Mackay; Eric A Stone; Julien F Ayroles
Journal:  Nat Rev Genet       Date:  2009-08       Impact factor: 53.242

8.  Compensating for our load of mutations: freezing the meltdown of small populations.

Authors:  A Poon; S P Otto
Journal:  Evolution       Date:  2000-10       Impact factor: 3.694

9.  Full-genome RNAi profiling of early embryogenesis in Caenorhabditis elegans.

Authors:  B Sönnichsen; L B Koski; A Walsh; P Marschall; B Neumann; M Brehm; A-M Alleaume; J Artelt; P Bettencourt; E Cassin; M Hewitson; C Holz; M Khan; S Lazik; C Martin; B Nitzsche; M Ruer; J Stamford; M Winzi; R Heinkel; M Röder; J Finell; H Häntsch; S J M Jones; M Jones; F Piano; K C Gunsalus; K Oegema; P Gönczy; A Coulson; A A Hyman; C J Echeverri
Journal:  Nature       Date:  2005-03-24       Impact factor: 49.962

10.  Prevalent positive epistasis in Escherichia coli and Saccharomyces cerevisiae metabolic networks.

Authors:  Xionglei He; Wenfeng Qian; Zhi Wang; Ying Li; Jianzhi Zhang
Journal:  Nat Genet       Date:  2010-01-24       Impact factor: 38.330

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  244 in total

1.  Divergence of duplicate genes in exon-intron structure.

Authors:  Guixia Xu; Chunce Guo; Hongyan Shan; Hongzhi Kong
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-09       Impact factor: 11.205

2.  On the scent of pleiotropy.

Authors:  Nadia D Singh; Kerry L Shaw
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-22       Impact factor: 11.205

3.  On the pleiotropic structure of the genotype-phenotype map and the evolvability of complex organisms.

Authors:  William G Hill; Xu-Sheng Zhang
Journal:  Genetics       Date:  2012-01-03       Impact factor: 4.562

4.  Human genetics: pleiotropic mutations.

Authors:  Hannah Stower
Journal:  Nat Rev Genet       Date:  2011-12-06       Impact factor: 53.242

5.  Assessing pleiotropy and its evolutionary consequences: pleiotropy is not necessarily limited, nor need it hinder the evolution of complexity.

Authors:  William G Hill; Xu-Sheng Zhang
Journal:  Nat Rev Genet       Date:  2012-02-21       Impact factor: 53.242

6.  Bayesian mapping of multiple traits in maize: the importance of pleiotropic effects in studying the inheritance of quantitative traits.

Authors:  Marcio Balestre; Renzo Garcia Von Pinho; Claudio Lopes de Souza; Júlio Sílvio de Sousa Bueno Filho
Journal:  Theor Appl Genet       Date:  2012-03-22       Impact factor: 5.699

Review 7.  Unravelling the human genome-phenome relationship using phenome-wide association studies.

Authors:  William S Bush; Matthew T Oetjens; Dana C Crawford
Journal:  Nat Rev Genet       Date:  2016-02-15       Impact factor: 53.242

8.  Molecular Origins of Complex Heritability in Natural Genotype-to-Phenotype Relationships.

Authors:  Christopher M Jakobson; Daniel F Jarosz
Journal:  Cell Syst       Date:  2019-05-01       Impact factor: 10.304

9.  Trans Effects on Gene Expression Can Drive Omnigenic Inheritance.

Authors:  Xuanyao Liu; Yang I Li; Jonathan K Pritchard
Journal:  Cell       Date:  2019-05-02       Impact factor: 41.582

10.  APOE modulates the correlation between triglycerides, cholesterol, and CHD through pleiotropy, and gene-by-gene interactions.

Authors:  Taylor J Maxwell; Christie M Ballantyne; James M Cheverud; Cameron S Guild; Chiadi E Ndumele; Eric Boerwinkle
Journal:  Genetics       Date:  2013-10-04       Impact factor: 4.562

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