Literature DB >> 21330131

Genome reprogramming and small interfering RNA in the Arabidopsis germline.

Joseph P Calarco1, Robert A Martienssen.   

Abstract

The movement of mobile small RNA signals between cells has garnered much interest over the last few years, and has recently been extended to germ cells during gamete development. Focusing on plants, we review mobile RNA signals that arise following reprogramming in the germline, and their effect on transposable element silencing on the one hand and on meiotic and apomictic germ cell fate on the other. A potential role for reprogramming and small RNA in hybrid formation and speciation is proposed.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID： 21330131      PMCID： PMC3073301          DOI： 10.1016/j.gde.2011.01.014

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN： 0959-437X            Impact factor:   5.578


  50 in total

1.  Controlling elements and the gene.

Authors:  B MCCLINTOCK
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1956

2.  Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation.

Authors:  Yasuyuki Onodera; Jeremy R Haag; Thomas Ream; Pedro Costa Nunes; Olga Pontes; Craig S Pikaard
Journal:  Cell       Date:  2005-03-11       Impact factor: 41.582

3.  DEMETER DNA glycosylase establishes MEDEA polycomb gene self-imprinting by allele-specific demethylation.

Authors:  Mary Gehring; Jin Hoe Huh; Tzung-Fu Hsieh; Jon Penterman; Yeonhee Choi; John J Harada; Robert B Goldberg; Robert L Fischer
Journal:  Cell       Date:  2006-02-10       Impact factor: 41.582

4.  Germ line transposition of the copia retrotransposon in Drosophila melanogaster is restricted to males by tissue-specific control of copia RNA levels.

Authors:  E Pasyukova; S Nuzhdin; W Li; A J Flavell
Journal:  Mol Gen Genet       Date:  1997-06

5.  A mouse model of human L1 retrotransposition.

Authors:  Eric M Ostertag; Ralph J DeBerardinis; John L Goodier; Yue Zhang; Nuo Yang; George L Gerton; Haig H Kazazian
Journal:  Nat Genet       Date:  2002-11-04       Impact factor: 38.330

6.  Maintenance of DNA methylation during the Arabidopsis life cycle is essential for parental imprinting.

Authors:  Pauline E Jullien; Tetsu Kinoshita; Nir Ohad; Frédéric Berger
Journal:  Plant Cell       Date:  2006-04-28       Impact factor: 11.277

7.  Germ line-specific expression of intracisternal A-particle retrotransposons in transgenic mice.

Authors:  A Dupressoir; T Heidmann
Journal:  Mol Cell Biol       Date:  1996-08       Impact factor: 4.272

8.  Transcriptome analysis of haploid male gametophyte development in Arabidopsis.

Authors:  David Honys; David Twell
Journal:  Genome Biol       Date:  2004-10-27       Impact factor: 13.583

9.  The basis for germline specificity of the hobo transposable element in Drosophila melanogaster.

Authors:  B R Calvi; W M Gelbart
Journal:  EMBO J       Date:  1994-04-01       Impact factor: 11.598

10.  Distinct mechanisms determine transposon inheritance and methylation via small interfering RNA and histone modification.

Authors:  Zachary Lippman; Bruce May; Cristy Yordan; Tatjana Singer; Rob Martienssen
Journal:  PLoS Biol       Date:  2003-12-22       Impact factor: 8.029
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  11 in total

1.  Arabidopsis RNA Polymerase IV generates 21-22 nucleotide small RNAs that can participate in RNA-directed DNA methylation and may regulate genes.

Authors:  Kaushik Panda; Andrea D McCue; R Keith Slotkin
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2020-02-10       Impact factor: 6.237

2.  Temperature-dependent survival of Turnip crinkle virus-infected arabidopsis plants relies on an RNA silencing-based defense that requires dcl2, AGO2, and HEN1.

Authors:  Xiuchun Zhang; Xiaofeng Zhang; Jasleen Singh; Dawei Li; Feng Qu
Journal:  J Virol       Date:  2012-04-11       Impact factor: 5.103

3.  Epigenetic Modifications during Angiosperm Gametogenesis.

Authors:  Zoë Migicovsky; Igor Kovalchuk
Journal:  Front Plant Sci       Date:  2012-02-06       Impact factor: 5.753

4.  AGO6 functions in RNA-mediated transcriptional gene silencing in shoot and root meristems in Arabidopsis thaliana.

Authors:  Changho Eun; Zdravko J Lorkovic; Ulf Naumann; Quan Long; Ericka R Havecker; Stacey A Simon; Blake C Meyers; Antonius J M Matzke; Marjori Matzke
Journal:  PLoS One       Date:  2011-10-05       Impact factor: 3.240

5.  Evolutionary Implications of Mechanistic Models of TE-Mediated Hybrid Incompatibility.

Authors:  Dean M Castillo; Leonie C Moyle
Journal:  Int J Evol Biol       Date:  2012-02-16

Review 6.  The male germline of angiosperms: repertoire of an inconspicuous but important cell lineage.

Authors:  Scott D Russell; Daniel S Jones
Journal:  Front Plant Sci       Date:  2015-03-20       Impact factor: 5.753

7.  A new approach for annotation of transposable elements using small RNA mapping.

Authors:  Moaine El Baidouri; Kyung Do Kim; Brian Abernathy; Siwaret Arikit; Florian Maumus; Olivier Panaud; Blake C Meyers; Scott A Jackson
Journal:  Nucleic Acids Res       Date:  2015-03-26       Impact factor: 16.971

Review 8.  Involvement of eukaryotic small RNA pathways in host defense and viral pathogenesis.

Authors:  Julie Hicks; Hsiao-Ching Liu
Journal:  Viruses       Date:  2013-10-30       Impact factor: 5.048

9.  Random Plant Viral Variants Attain Temporal Advantages During Systemic Infections and in Turn Resist other Variants of the Same Virus.

Authors:  Xiao-Feng Zhang; Jiangbo Guo; Xiuchun Zhang; Tea Meulia; Pierce Paul; Laurence V Madden; Dawei Li; Feng Qu
Journal:  Sci Rep       Date:  2015-10-20       Impact factor: 4.379

10.  FACS-based purification of Arabidopsis microspores, sperm cells and vegetative nuclei.

Authors:  Filipe Borges; Rui Gardner; Telma Lopes; Joseph P Calarco; Leonor C Boavida; R Keith Slotkin; Robert A Martienssen; Jörg D Becker
Journal:  Plant Methods       Date:  2012-10-17       Impact factor: 4.993
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