Literature DB >> 21328311

Time resolved SAXS and RNA folding.

Lois Pollack1.   

Abstract

Small angle X-ray scattering provides low resolution structural information about macromolecules in solution. When coupled with rapid mixing methods, SAXS reports time-dependent conformational changes of RNA induced by the addition of Mg(2+) to trigger folding. Thus time-resolved SAXS provides unique information about the global or overall structures of transient intermediates populated during folding. Notably, SAXS provides information about the earliest folding events, which can evade detection by other methods.
Copyright © 2011 Wiley Periodicals, Inc.

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Year:  2011        PMID: 21328311     DOI: 10.1002/bip.21604

Source DB:  PubMed          Journal:  Biopolymers        ISSN: 0006-3525            Impact factor:   2.505


  13 in total

1.  Mapping L1 ligase ribozyme conformational switch.

Authors:  George M Giambaşu; Tai-Sung Lee; William G Scott; Darrin M York
Journal:  J Mol Biol       Date:  2012-07-03       Impact factor: 5.469

2.  Effects of Preferential Counterion Interactions on the Specificity of RNA Folding.

Authors:  Joon Ho Roh; Duncan Kilburn; Reza Behrouzi; Wokyung Sung; R M Briber; Sarah A Woodson
Journal:  J Phys Chem Lett       Date:  2018-09-18       Impact factor: 6.475

3.  Ion Condensation onto Ribozyme Is Site Specific and Fold Dependent.

Authors:  Naoto Hori; Natalia A Denesyuk; D Thirumalai
Journal:  Biophys J       Date:  2019-05-11       Impact factor: 4.033

4.  Quantifying radiation damage in biomolecular small-angle X-ray scattering.

Authors:  Jesse B Hopkins; Robert E Thorne
Journal:  J Appl Crystallogr       Date:  2016-05-04       Impact factor: 3.304

5.  Analysis of riboswitch structure and ligand binding using small-angle X-ray scattering (SAXS).

Authors:  Nathan J Baird; Adrian R Ferré-D'Amaré
Journal:  Methods Mol Biol       Date:  2014

6.  Nucleic acid structure characterization by small angle X-ray scattering (SAXS).

Authors:  Jordan E Burke; Samuel E Butcher
Journal:  Curr Protoc Nucleic Acid Chem       Date:  2012-12

7.  How the Conformations of an Internal Junction Contribute to Fold an RNA Domain.

Authors:  Yen-Lin Chen; Julie L Sutton; Lois Pollack
Journal:  J Phys Chem B       Date:  2018-10-17       Impact factor: 2.991

8.  Bridging the gap between in vitro and in vivo RNA folding.

Authors:  Kathleen A Leamy; Sarah M Assmann; David H Mathews; Philip C Bevilacqua
Journal:  Q Rev Biophys       Date:  2016-06-24       Impact factor: 5.318

Review 9.  SAXS studies of RNA: structures, dynamics, and interactions with partners.

Authors:  Yujie Chen; Lois Pollack
Journal:  Wiley Interdiscip Rev RNA       Date:  2016-04-12       Impact factor: 9.957

10.  BioXTAS RAW: improvements to a free open-source program for small-angle X-ray scattering data reduction and analysis.

Authors:  Jesse Bennett Hopkins; Richard E Gillilan; Soren Skou
Journal:  J Appl Crystallogr       Date:  2017-09-05       Impact factor: 3.304

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