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Literature DB >> 21327513

Designer promoter: an artwork of cis engineering.

Rajesh Mehrotra¹, Gauri Gupta, Riccha Sethi, Purva Bhalothia, Narayan Kumar, Sandhya Mehrotra.

Abstract

Advances in systematic computational biology and rapid elucidation of synergistic interplay between cis and trans factors governing transcriptional control have facilitated functional annotation of gene networks. The generation of data through deconstructive, reconstructive and database assisted promoter studies, and its integration to principles of synthetic engineering has started an era of designer promoters. Exploration of natural promoter architecture and the concept of cis engineering have not only enabled fine tuning of single or multiple transgene expression in response to perturbations in the chemical, physiological and environmental stimuli but also provided researchers with a unique answer to various problems in crop improvement in the form of bidirectional promoters.

Mesh：

Year: 2011 PMID： 21327513 DOI： 10.1007/s11103-011-9755-3

Source DB: PubMed Journal: Plant Mol Biol ISSN： 0167-4412 Impact factor: 4.076

72 in total

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2. A variety of synergistic and antagonistic interactions mediated by cis-acting DNA motifs regulate gene expression in plant cells and modulate stability of the transcription complex formed on a basal promoter.

Authors: Samir V Sawant; Kanti Kiran; Rajesh Mehrotra; Chandra Prakash Chaturvedi; Suraiya A Ansari; Pratibha Singh; Niraj Lodhi; Rakesh Tuli
Journal: J Exp Bot Date: 2005-07-12 Impact factor: 6.992

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Journal: Plant Cell Date: 1994-05 Impact factor: 11.277

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Authors: Laurence M Ettwiller; Johan Rung; Ewan Birney
Journal: Genome Res Date: 2003-05 Impact factor: 9.043

5. Genome-wide comparative analysis of putative bidirectional promoters from rice, Arabidopsis and Populus.

Authors: Surendar Reddy Dhadi; Nicholas Krom; Wusirika Ramakrishna
Journal: Gene Date: 2008-10-11 Impact factor: 3.688

6. Strategies for development of functionally equivalent promoters with minimum sequence homology for transgene expression in plants: cis-elements in a novel DNA context versus domain swapping.

Authors: Simran Bhullar; Suma Chakravarthy; Sonia Advani; Sudipta Datta; Deepak Pental; Pradeep Kumar Burma
Journal: Plant Physiol Date: 2003-05-01 Impact factor: 8.340

7. pORE: a modular binary vector series suited for both monocot and dicot plant transformation.

Authors: Catherine Coutu; James Brandle; Dan Brown; Kirk Brown; Brian Miki; John Simmonds; Dwayne D Hegedus
Journal: Transgenic Res Date: 2007-02-02 Impact factor: 3.145

8. Identification of a new 130 bp cis-acting element in the TsVP1 promoter involved in the salt stress response from Thellungiella halophila.

Authors: Qinghua Sun; Feng Gao; Lei Zhao; Kunpeng Li; Juren Zhang
Journal: BMC Plant Biol Date: 2010-05-18 Impact factor: 4.215

9. Isolation and functional characterization of cold-regulated promoters, by digitally identifying peach fruit cold-induced genes from a large EST dataset.

Authors: Andrés Tittarelli; Margarita Santiago; Andrea Morales; Lee A Meisel; Herman Silva
Journal: BMC Plant Biol Date: 2009-09-22 Impact factor: 4.215

10. FORCA, a promoter element that responds to crosstalk between defense and light signaling.

Authors: Alexandre Evrard; Theogene Ndatimana; Thomas Eulgem
Journal: BMC Plant Biol Date: 2009-01-07 Impact factor: 4.215

20 in total

Review 1. Synthetic promoters in planta.

Authors: Nrisingha Dey; Shayan Sarkar; Sefali Acharya; Indu B Maiti
Journal: Planta Date: 2015-08-07 Impact factor: 4.116

Review 2. Advanced genetic tools for plant biotechnology.

Authors: Wusheng Liu; Joshua S Yuan; C Neal Stewart
Journal: Nat Rev Genet Date: 2013-10-09 Impact factor: 53.242

Review 3. Synthetic Promoters: Designing the cis Regulatory Modules for Controlled Gene Expression.

Authors: Jameel Aysha; Muhammad Noman; Fawei Wang; Weican Liu; Yonggang Zhou; Haiyan Li; Xiaowei Li
Journal: Mol Biotechnol Date: 2018-08 Impact factor: 2.695

4. Synthetic promoters consisting of defined cis-acting elements link multiple signaling pathways to probenazole-inducible system.

Authors: Zheng Zhu; Jiong Gao; Jin-xiao Yang; Xiao-yan Wang; Guo-dong Ren; Yu-long Ding; Ben-ke Kuai
Journal: J Zhejiang Univ Sci B Date: 2015-04 Impact factor: 3.066

Review 5. Perspectives of CRISPR/Cas-mediated cis-engineering in horticulture: unlocking the neglected potential for crop improvement.

Authors: Qiang Li; Manoj Sapkota; Esther van der Knaap
Journal: Hortic Res Date: 2020-03-15 Impact factor: 6.793