Literature DB >> 21326935

Bacterial supersystem for alginate import/metabolism and its environmental and bioenergy applications.

Wataru Hashimoto1, Shigeyuki Kawai, Kousaku Murata.   

Abstract

Distinct from most alginate-assimilating bacteria that secrete polysaccharide lyases extracellularly, a gram-negative bacterium, Sphingomonas sp. A1 (strain A1), can directly incorporate alginate into its cytoplasm, without degradation, through a "superchannel" consisting of a mouth-like pit on the cell surface, periplasmic binding proteins, and a cytoplasmic membrane-bound ATP-binding cassette transporter. Flagellin homologues function as cell surface alginate receptors essential for expressing the superchannel. Cytoplasmic alginate lyases with different substrate specificities and action modes degrade the polysaccharide to its constituent monosaccharides. The resultant monosaccharides, α-keto acids, are converted to a reduced form by NADPH-dependent reductase, and are finally metabolized in the TCA cycle. Transplantation of the strain A1 superchannel to xenobiotic-degrading sphingomonads enhances bioremediation through the propagation of bacteria with an elevated transport activity. Furthermore, strain A1 cells transformed with Zymomonas mobilis genes for pyruvate decarboxylase and alcohol dehydrogenase II produce considerable amounts of biofuel ethanol from alginate when grown statically.
© 2010 Landes Bioscience

Entities:  

Keywords:  ABC transporter; alginate; biofuel; bioremediation; flagellin; pit; polysaccharide lyase; sphingomonas

Mesh:

Substances:

Year:  2009        PMID: 21326935      PMCID: PMC3026450          DOI: 10.4161/bbug.1.2.10322

Source DB:  PubMed          Journal:  Bioeng Bugs        ISSN: 1949-1018


  75 in total

1.  Crystal structure of alginate lyase A1-III from Sphingomonas species A1 at 1.78 A resolution.

Authors:  H J Yoon; B Mikami; W Hashimoto; K Murata
Journal:  J Mol Biol       Date:  1999-07-09       Impact factor: 5.469

2.  Protonmotive force, ExbB and ligand-bound FepA drive conformational changes in TonB.

Authors:  R A Larsen; M G Thomas; K Postle
Journal:  Mol Microbiol       Date:  1999-03       Impact factor: 3.501

Review 3.  Signaling properties of hyaluronan receptors.

Authors:  Eva A Turley; Paul W Noble; Lilly Y W Bourguignon
Journal:  J Biol Chem       Date:  2001-11-20       Impact factor: 5.157

Review 4.  Bacterial biofilms: a common cause of persistent infections.

Authors:  J W Costerton; P S Stewart; E P Greenberg
Journal:  Science       Date:  1999-05-21       Impact factor: 47.728

5.  Studies on the nature of interaction of iron(III) with alginates.

Authors:  Kalarical Janardhanan Sreeram; H Yamini Shrivastava; Balachandran Unni Nair
Journal:  Biochim Biophys Acta       Date:  2004-01-22

Review 6.  Superchannel of bacteria: biological significance and new horizons.

Authors:  Kousaku Murata; Shigeyuki Kawai; Bunzo Mikami; Wataru Hashimoto
Journal:  Biosci Biotechnol Biochem       Date:  2008-02-07       Impact factor: 2.043

7.  Pit structure on bacterial cell surface.

Authors:  T Hisano; N Kimura; W Hashimoto; K Murata
Journal:  Biochem Biophys Res Commun       Date:  1996-03-27       Impact factor: 3.575

8.  Nucleotide sequence of the gene for the ferrienterochelin receptor FepA in Escherichia coli. Homology among outer membrane receptors that interact with TonB.

Authors:  M D Lundrigan; R J Kadner
Journal:  J Biol Chem       Date:  1986-08-15       Impact factor: 5.157

9.  Molecular identification and characterization of an alginate-binding protein on the cell surface of Sphingomonas sp. A1.

Authors:  Jinshan He; Hirokazu Nankai; Wataru Hashimoto; Kousaku Murata
Journal:  Biochem Biophys Res Commun       Date:  2004-09-24       Impact factor: 3.575

10.  Genome sequence of Azotobacter vinelandii, an obligate aerobe specialized to support diverse anaerobic metabolic processes.

Authors:  João C Setubal; Patricia dos Santos; Barry S Goldman; Helga Ertesvåg; Guadelupe Espin; Luis M Rubio; Svein Valla; Nalvo F Almeida; Divya Balasubramanian; Lindsey Cromes; Leonardo Curatti; Zijin Du; Eric Godsy; Brad Goodner; Kaitlyn Hellner-Burris; José A Hernandez; Katherine Houmiel; Juan Imperial; Christina Kennedy; Timothy J Larson; Phil Latreille; Lauren S Ligon; Jing Lu; Mali Maerk; Nancy M Miller; Stacie Norton; Ina P O'Carroll; Ian Paulsen; Estella C Raulfs; Rebecca Roemer; James Rosser; Daniel Segura; Steve Slater; Shawn L Stricklin; David J Studholme; Jian Sun; Carlos J Viana; Erik Wallin; Baomin Wang; Cathy Wheeler; Huijun Zhu; Dennis R Dean; Ray Dixon; Derek Wood
Journal:  J Bacteriol       Date:  2009-05-08       Impact factor: 3.490

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  11 in total

1.  Bacterial cyclic β-(1,2)-glucans sequester iron to protect against iron-induced toxicity.

Authors:  Sreegowrinadh Javvadi; Sheo Shankar Pandey; Amita Mishra; Binod Bihari Pradhan; Subhadeep Chatterjee
Journal:  EMBO Rep       Date:  2017-12-08       Impact factor: 8.807

2.  Alginate-dependent gene expression mechanism in Sphingomonas sp. strain A1.

Authors:  Chie Hayashi; Ryuichi Takase; Keiko Momma; Yukie Maruyama; Kousaku Murata; Wataru Hashimoto
Journal:  J Bacteriol       Date:  2014-05-09       Impact factor: 3.490

3.  Structure-based conversion of the coenzyme requirement of a short-chain dehydrogenase/reductase involved in bacterial alginate metabolism.

Authors:  Ryuichi Takase; Bunzo Mikami; Shigeyuki Kawai; Kousaku Murata; Wataru Hashimoto
Journal:  J Biol Chem       Date:  2014-10-06       Impact factor: 5.157

4.  Comparative characterization of two marine alginate lyases from Zobellia galactanivorans reveals distinct modes of action and exquisite adaptation to their natural substrate.

Authors:  François Thomas; Lena C E Lundqvist; Murielle Jam; Alexandra Jeudy; Tristan Barbeyron; Corine Sandström; Gurvan Michel; Mirjam Czjzek
Journal:  J Biol Chem       Date:  2013-06-19       Impact factor: 5.157

Review 5.  Alginate-modifying enzymes: biological roles and biotechnological uses.

Authors:  Helga Ertesvåg
Journal:  Front Microbiol       Date:  2015-05-27       Impact factor: 5.640

Review 6.  Biofuel Production Based on Carbohydrates from Both Brown and Red Macroalgae: Recent Developments in Key Biotechnologies.

Authors:  Shigeyuki Kawai; Kousaku Murata
Journal:  Int J Mol Sci       Date:  2016-02-06       Impact factor: 5.923

7.  Comparison of Alginate Utilization Pathways in Culturable Bacteria Isolated From Arctic and Antarctic Marine Environments.

Authors:  Qian-Qian Cha; Xiu-Juan Wang; Xue-Bing Ren; Dong Li; Peng Wang; Ping-Yi Li; Hui-Hui Fu; Xi-Ying Zhang; Xiu-Lan Chen; Yu-Zhong Zhang; Fei Xu; Qi-Long Qin
Journal:  Front Microbiol       Date:  2021-01-27       Impact factor: 5.640

Review 8.  Degradation and Utilization of Alginate by Marine Pseudoalteromonas: a Review.

Authors:  Fei Xu; Qian-Qian Cha; Yu-Zhong Zhang; Xiu-Lan Chen
Journal:  Appl Environ Microbiol       Date:  2021-08-11       Impact factor: 4.792

9.  Substrate scope of a dehydrogenase from Sphingomonas species A1 and its potential application in the synthesis of rare sugars and sugar derivatives.

Authors:  Barbara Beer; André Pick; Manuel Döring; Petra Lommes; Volker Sieber
Journal:  Microb Biotechnol       Date:  2018-04-26       Impact factor: 5.813

Review 10.  4-Deoxy-l-erythro-5-hexoseulose Uronate (DEH) and DEH Reductase: Key Molecule and Enzyme for the Metabolism and Utilization of Alginate.

Authors:  Shigeyuki Kawai; Wataru Hashimoto
Journal:  Molecules       Date:  2022-01-06       Impact factor: 4.411

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