Literature DB >> 21317247

Marker removal system for Thermoanaerobacterium saccharolyticum and development of a markerless ethanologen.

A Joe Shaw1, Sean F Covalla, David A Hogsett, Christopher D Herring.   

Abstract

Marker removal strategies were developed for Thermoanaerobacterium saccharolyticum to select against the pyrF gene and the pta and ack genes. The pta- and ack-based haloacetate selective strategy was subsequently used to create strain M0355, a markerless Δldh Δpta Δack strain that produces ethanol at a high yield.

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Year:  2011        PMID： 21317247      PMCID： PMC3067457          DOI： 10.1128/AEM.01731-10

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  13 in total

1.  Genes encoding two different beta-glucosidases of Thermoanaerobacter brockii are clustered in a common operon.

Authors:  R Breves; K Bronnenmeier; N Wild; F Lottspeich; W L Staudenbauer; J Hofemeister
Journal:  Appl Environ Microbiol       Date:  1997-10       Impact factor: 4.792

Review 2.  Cellulase, clostridia, and ethanol.

Authors:  Arnold L Demain; Michael Newcomb; J H David Wu
Journal:  Microbiol Mol Biol Rev       Date:  2005-03       Impact factor: 11.056

Review 3.  Consolidated bioprocessing of cellulosic biomass: an update.

Authors:  Lee R Lynd; Willem H van Zyl; John E McBride; Mark Laser
Journal:  Curr Opin Biotechnol       Date:  2005-10       Impact factor: 9.740

Review 4.  How biotech can transform biofuels.

Authors:  Lee R Lynd; Mark S Laser; David Bransby; Bruce E Dale; Brian Davison; Richard Hamilton; Michael Himmel; Martin Keller; James D McMillan; John Sheehan; Charles E Wyman
Journal:  Nat Biotechnol       Date:  2008-02       Impact factor: 54.908

5.  Differences in Xylan Degradation by Various Noncellulolytic Thermophilic Anaerobes and Clostridium thermocellum.

Authors:  J Wiegel; C P Mothershed; J Puls
Journal:  Appl Environ Microbiol       Date:  1985-03       Impact factor: 4.792

6.  Site-directed mutagenesis by overlap extension using the polymerase chain reaction.

Authors:  S N Ho; H D Hunt; R M Horton; J K Pullen; L R Pease
Journal:  Gene       Date:  1989-04-15       Impact factor: 3.688

7.  Differential toxicity of monochloroacetate, monofluoroacetate and monoiodoacetate in rats.

Authors:  F D Hayes; R D Short; J E Gibson
Journal:  Toxicol Appl Pharmacol       Date:  1973-09       Impact factor: 4.219

8.  Advances in development of a genetic system for Thermoanaerobacterium spp.: expression of genes encoding hydrolytic enzymes, development of a second shuttle vector, and integration of genes into the chromosome.

Authors:  V Mai; J Wiegel
Journal:  Appl Environ Microbiol       Date:  2000-11       Impact factor: 4.792

Review 9.  What is (and is not) vital to advancing cellulosic ethanol.

Authors:  Charles E Wyman
Journal:  Trends Biotechnol       Date:  2007-02-22       Impact factor: 19.536

10.  Metabolic engineering of a thermophilic bacterium to produce ethanol at high yield.

Authors:  A Joe Shaw; Kara K Podkaminer; Sunil G Desai; John S Bardsley; Stephen R Rogers; Philip G Thorne; David A Hogsett; Lee R Lynd
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-08       Impact factor: 11.205
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  18 in total

1.  The bifunctional alcohol and aldehyde dehydrogenase gene, adhE, is necessary for ethanol production in Clostridium thermocellum and Thermoanaerobacterium saccharolyticum.

Authors:  Jonathan Lo; Tianyong Zheng; Shuen Hon; Daniel G Olson; Lee R Lynd
Journal:  J Bacteriol       Date:  2015-02-09       Impact factor: 3.490

Review 2.  Microbial application of thermophilic Thermoanaerobacterium species in lignocellulosic biorefinery.

Authors:  Mengdi Wu; Yujia Jiang; Yansong Liu; Lu Mou; Wenming Zhang; Fengxue Xin; Min Jiang
Journal:  Appl Microbiol Biotechnol       Date:  2021-07-20       Impact factor: 4.813

3.  Characterization of xylan utilization and discovery of a new endoxylanase in Thermoanaerobacterium saccharolyticum through targeted gene deletions.

Authors:  Kara K Podkaminer; Adam M Guss; Heather L Trajano; David A Hogsett; Lee R Lynd
Journal:  Appl Environ Microbiol       Date:  2012-09-28       Impact factor: 4.792

4.  Both adhE and a Separate NADPH-Dependent Alcohol Dehydrogenase Gene, adhA, Are Necessary for High Ethanol Production in Thermoanaerobacterium saccharolyticum.

Authors:  Tianyong Zheng; Daniel G Olson; Sean J Murphy; Xiongjun Shao; Liang Tian; Lee R Lynd
Journal:  J Bacteriol       Date:  2017-01-12       Impact factor: 3.490

5.  Profile of secreted hydrolases, associated proteins, and SlpA in Thermoanaerobacterium saccharolyticum during the degradation of hemicellulose.

Authors:  D H Currie; A M Guss; C D Herring; R J Giannone; C M Johnson; P K Lankford; S D Brown; R L Hettich; L R Lynd
Journal:  Appl Environ Microbiol       Date:  2014-06-06       Impact factor: 4.792

6.  Deletion of nfnAB in Thermoanaerobacterium saccharolyticum and Its Effect on Metabolism.

Authors:  Jonathan Lo; Tianyong Zheng; Daniel G Olson; Natalie Ruppertsberger; Shital A Tripathi; Liang Tian; Adam M Guss; Lee R Lynd
Journal:  J Bacteriol       Date:  2015-06-29       Impact factor: 3.490

7.  Counterselection system for Geobacillus kaustophilus HTA426 through disruption of pyrF and pyrR.

Authors:  Hirokazu Suzuki; Ayano Murakami; Ken-ichi Yoshida
Journal:  Appl Environ Microbiol       Date:  2012-08-10       Impact factor: 4.792

8.  Computational design and characterization of a temperature-sensitive plasmid replicon for gram positive thermophiles.

Authors:  Daniel G Olson; Lee R Lynd
Journal:  J Biol Eng       Date:  2012-05-11       Impact factor: 4.355

9.  Genomic evaluation of Thermoanaerobacter spp. for the construction of designer co-cultures to improve lignocellulosic biofuel production.

Authors:  Tobin J Verbeke; Xiangli Zhang; Bernard Henrissat; Vic Spicer; Thomas Rydzak; Oleg V Krokhin; Brian Fristensky; David B Levin; Richard Sparling
Journal:  PLoS One       Date:  2013-03-26       Impact factor: 3.240

10.  Functional heterologous expression of an engineered full length CipA from Clostridium thermocellum in Thermoanaerobacterium saccharolyticum.

Authors:  Devin H Currie; Christopher D Herring; Adam M Guss; Daniel G Olson; David A Hogsett; Lee R Lynd
Journal:  Biotechnol Biofuels       Date:  2013-03-01       Impact factor: 6.040
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