Literature DB >> 21317139

eGOB: eukaryotic Gene Order Browser.

Marcela Dávila López1, Tore Samuelsson.   

Abstract

UNLABELLED: A large number of genomes have been sequenced, allowing a range of comparative studies. Here, we present the eukaryotic Gene Order Browser with information on the order of protein and non-coding RNA (ncRNA) genes of 74 different eukaryotic species. The browser is able to display a gene of interest together with its genomic context in all species where that gene is present. Thereby, questions related to the evolution of gene organization and non-random gene order may be examined. The browser also provides access to data collected on pairs of adjacent genes that are evolutionarily conserved. AVAILABILITY: eGOB as well as underlying data are freely available at http://egob.biomedicine.gu.se SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. CONTACT: tore.samuelsson@medkem.gu.se.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21317139     DOI: 10.1093/bioinformatics/btr075

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  7 in total

1.  LCGserver: A Webserver for Exploring Evolutionary Trajectory of Gene Orders in a Large Number of Genomes.

Authors:  Dapeng Wang; Jun Yu
Journal:  OMICS       Date:  2015-08-10

2.  MLGO: phylogeny reconstruction and ancestral inference from gene-order data.

Authors:  Fei Hu; Yu Lin; Jijun Tang
Journal:  BMC Bioinformatics       Date:  2014-11-08       Impact factor: 3.169

3.  LCGbase: A Comprehensive Database for Lineage-Based Co-regulated Genes.

Authors:  Dapeng Wang; Yubin Zhang; Zhonghua Fan; Guiming Liu; Jun Yu
Journal:  Evol Bioinform Online       Date:  2011-12-13       Impact factor: 1.625

4.  GenomicusPlants: a web resource to study genome evolution in flowering plants.

Authors:  Alexandra Louis; Florent Murat; Jérôme Salse; Hugues Roest Crollius
Journal:  Plant Cell Physiol       Date:  2014-11-27       Impact factor: 4.927

5.  Plastid-LCGbase: a collection of evolutionarily conserved plastid-associated gene pairs.

Authors:  Dapeng Wang; Jun Yu
Journal:  Nucleic Acids Res       Date:  2014-11-05       Impact factor: 16.971

6.  The chordate proteome history database.

Authors:  Anthony Levasseur; Julien Paganini; Jacques Dainat; Julie D Thompson; Olivier Poch; Pierre Pontarotti; Philippe Gouret
Journal:  Evol Bioinform Online       Date:  2012-08-01       Impact factor: 1.625

7.  Genomicus: five genome browsers for comparative genomics in eukaryota.

Authors:  Alexandra Louis; Matthieu Muffato; Hugues Roest Crollius
Journal:  Nucleic Acids Res       Date:  2012-11-27       Impact factor: 16.971

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.