Literature DB >> 21311740

Translational Research Design Templates, Grid Computing, and HPC.

Joel Saltz, Scott Oster, Shannon Hastings, Stephen Langella, Renato Ferreira, Justin Permar, Ashish Sharma, David Ervin, Tony Pan, Umit Catalyurek, Tahsin Kurc.   

Abstract

Design templates that involve discovery, analysis, and integration of information resources commonly occur in many scientific research projects. In this paper we present examples of design templates from the biomedical translational research domain and discuss the requirements imposed on Grid middleware infrastructures by them. Using caGrid, which is a Grid middleware system based on the model driven architecture (MDA) and the service oriented architecture (SOA) paradigms, as a starting point, we discuss architecture directions for MDA and SOA based systems like caGrid to support common design templates.

Entities:  

Year:  2008        PMID: 21311740      PMCID: PMC3035416          DOI: 10.1109/IPDPS.2008.4536089

Source DB:  PubMed          Journal:  IPDPS


  8 in total

1.  caCORE: a common infrastructure for cancer informatics.

Authors:  Peter A Covitz; Frank Hartel; Carl Schaefer; Sherri De Coronado; Gilberto Fragoso; Himanso Sahni; Scott Gustafson; Kenneth H Buetow
Journal:  Bioinformatics       Date:  2003-12-12       Impact factor: 6.937

2.  The BRIDG project: a technical report.

Authors:  Douglas B Fridsma; Julie Evans; Smita Hastak; Charles N Mead
Journal:  J Am Med Inform Assoc       Date:  2007-12-20       Impact factor: 4.497

3.  caGrid 1.0: an enterprise Grid infrastructure for biomedical research.

Authors:  Scott Oster; Stephen Langella; Shannon Hastings; David Ervin; Ravi Madduri; Joshua Phillips; Tahsin Kurc; Frank Siebenlist; Peter Covitz; Krishnakant Shanbhag; Ian Foster; Joel Saltz
Journal:  J Am Med Inform Assoc       Date:  2007-12-20       Impact factor: 4.497

4.  caGrid 1.0: a Grid enterprise architecture for cancer research.

Authors:  Scott Oster; Stephen Langella; Shannon Hastings; David Ervin; Ravi Madduri; Tahsin Kurc; Frank Siebenlist; Peter Covitz; Krishnakant Shanbhag; Ian Foster; Joel Saltz
Journal:  AMIA Annu Symp Proc       Date:  2007-10-11

Review 5.  Mathematical modeling of cancer: the future of prognosis and treatment.

Authors:  Vito Quaranta; Alissa M Weaver; Peter T Cummings; Alexander R A Anderson
Journal:  Clin Chim Acta       Date:  2005-07-24       Impact factor: 3.786

6.  caGrid: design and implementation of the core architecture of the cancer biomedical informatics grid.

Authors:  Joel Saltz; Scott Oster; Shannon Hastings; Stephen Langella; Tahsin Kurc; William Sanchez; Manav Kher; Arumani Manisundaram; Krishnakant Shanbhag; Peter Covitz
Journal:  Bioinformatics       Date:  2006-06-09       Impact factor: 6.937

7.  The Cancer Biomedical Informatics Grid (caBIG) Security Infrastructure.

Authors:  Stephen Langella; Scott Oster; Shannon Hastings; Frank Siebenlist; Joshua Phillips; David Ervin; Justin Permar; Tahsin Kurc; Joel Saltz
Journal:  AMIA Annu Symp Proc       Date:  2007-10-11

8.  The caCORE Software Development Kit: streamlining construction of interoperable biomedical information services.

Authors:  Joshua Phillips; Ram Chilukuri; Gilberto Fragoso; Denise Warzel; Peter A Covitz
Journal:  BMC Med Inform Decis Mak       Date:  2006-01-06       Impact factor: 2.796

  8 in total
  1 in total

1.  HPC AND GRID COMPUTING FOR INTEGRATIVE BIOMEDICAL RESEARCH.

Authors:  Tahsin Kurc; Shannon Hastings; Vijay Kumar; Stephen Langella; Ashish Sharma; Tony Pan; Scott Oster; David Ervin; Justin Permar; Sivaramakrishnan Narayanan; Yolanda Gil; Ewa Deelman; Mary Hall; Joel Saltz
Journal:  Int J High Perform Comput Appl       Date:  2009-08-01       Impact factor: 1.942

  1 in total

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