Literature DB >> 21307310

The pINDUCER lentiviral toolkit for inducible RNA interference in vitro and in vivo.

Kristen L Meerbrey1, Guang Hu, Jessica D Kessler, Kevin Roarty, Mamie Z Li, Justin E Fang, Jason I Herschkowitz, Anna E Burrows, Alberto Ciccia, Tingting Sun, Earlene M Schmitt, Ronald J Bernardi, Xiaoyong Fu, Christopher S Bland, Thomas A Cooper, Rachel Schiff, Jeffrey M Rosen, Thomas F Westbrook, Stephen J Elledge.   

Abstract

The discovery of RNAi has revolutionized loss-of-function genetic studies in mammalian systems. However, significant challenges still remain to fully exploit RNAi for mammalian genetics. For instance, genetic screens and in vivo studies could be broadly improved by methods that allow inducible and uniform gene expression control. To achieve this, we built the lentiviral pINDUCER series of expression vehicles for inducible RNAi in vivo. Using a multicistronic design, pINDUCER vehicles enable tracking of viral transduction and shRNA or cDNA induction in a broad spectrum of mammalian cell types in vivo. They achieve this uniform temporal, dose-dependent, and reversible control of gene expression across heterogenous cell populations via fluorescence-based quantification of reverse tet-transactivator expression. This feature allows isolation of cell populations that exhibit a potent, inducible target knockdown in vitro and in vivo that can be used in human xenotransplantation models to examine cancer drug targets.

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Year:  2011        PMID: 21307310      PMCID: PMC3048138          DOI: 10.1073/pnas.1019736108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  21 in total

Review 1.  Unlocking the potential of the human genome with RNA interference.

Authors:  Gregory J Hannon; John J Rossi
Journal:  Nature       Date:  2004-09-16       Impact factor: 49.962

2.  A lentiviral microRNA-based system for single-copy polymerase II-regulated RNA interference in mammalian cells.

Authors:  Frank Stegmeier; Guang Hu; Richard J Rickles; Gregory J Hannon; Stephen J Elledge
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-01       Impact factor: 11.205

3.  A genetic screen for candidate tumor suppressors identifies REST.

Authors:  Thomas F Westbrook; Eric S Martin; Michael R Schlabach; Yumei Leng; Anthony C Liang; Bin Feng; Jean J Zhao; Thomas M Roberts; Gail Mandel; Gregory J Hannon; Ronald A Depinho; Lynda Chin; Stephen J Elledge
Journal:  Cell       Date:  2005-06-17       Impact factor: 41.582

4.  Loss of transcriptional activity of a transgene is accompanied by DNA methylation and histone deacetylation and is prevented by insulators.

Authors:  M J Pikaart; F Recillas-Targa; G Felsenfeld
Journal:  Genes Dev       Date:  1998-09-15       Impact factor: 11.361

5.  Effects of genomic position on the expression of transduced copies of the white gene of Drosophila.

Authors:  R Levis; T Hazelrigg; G M Rubin
Journal:  Science       Date:  1985-08-09       Impact factor: 47.728

6.  Human breast cancer cells generated by oncogenic transformation of primary mammary epithelial cells.

Authors:  B Elenbaas; L Spirio; F Koerner; M D Fleming; D B Zimonjic; J L Donaher; N C Popescu; W C Hahn; R A Weinberg
Journal:  Genes Dev       Date:  2001-01-01       Impact factor: 11.361

7.  Human mammary epithelial cell transformation through the activation of phosphatidylinositol 3-kinase.

Authors:  Jean J Zhao; Ole V Gjoerup; Romesh R Subramanian; Yuan Cheng; Wen Chen; Thomas M Roberts; William C Hahn
Journal:  Cancer Cell       Date:  2003-05       Impact factor: 31.743

8.  A resource for large-scale RNA-interference-based screens in mammals.

Authors:  Patrick J Paddison; Jose M Silva; Douglas S Conklin; Mike Schlabach; Mamie Li; Shola Aruleba; Vivekanand Balija; Andy O'Shaughnessy; Lidia Gnoj; Kim Scobie; Kenneth Chang; Thomas Westbrook; Michele Cleary; Ravi Sachidanandam; W Richard McCombie; Stephen J Elledge; Gregory J Hannon
Journal:  Nature       Date:  2004-03-25       Impact factor: 49.962

9.  A large-scale RNAi screen in human cells identifies new components of the p53 pathway.

Authors:  Katrien Berns; E Marielle Hijmans; Jasper Mullenders; Thijn R Brummelkamp; Arno Velds; Mike Heimerikx; Ron M Kerkhoven; Mandy Madiredjo; Wouter Nijkamp; Britta Weigelt; Reuven Agami; Wei Ge; Guy Cavet; Peter S Linsley; Roderick L Beijersbergen; René Bernards
Journal:  Nature       Date:  2004-03-25       Impact factor: 49.962

10.  Toolkit for evaluating genes required for proliferation and survival using tetracycline-regulated RNAi.

Authors:  Johannes Zuber; Katherine McJunkin; Christof Fellmann; Lukas E Dow; Meredith J Taylor; Gregory J Hannon; Scott W Lowe
Journal:  Nat Biotechnol       Date:  2010-12-05       Impact factor: 54.908

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  350 in total

Review 1.  RNAi screening: new approaches, understandings, and organisms.

Authors:  Stephanie E Mohr; Norbert Perrimon
Journal:  Wiley Interdiscip Rev RNA       Date:  2011-09-22       Impact factor: 9.957

Review 2.  A primer on using pooled shRNA libraries for functional genomic screens.

Authors:  Guang Hu; Ji Luo
Journal:  Acta Biochim Biophys Sin (Shanghai)       Date:  2012-02       Impact factor: 3.848

3.  MEK plus PI3K/mTORC1/2 Therapeutic Efficacy Is Impacted by TP53 Mutation in Preclinical Models of Colorectal Cancer.

Authors:  Celina García-García; Martín A Rivas; Yasir H Ibrahim; María Teresa Calvo; Albert Gris-Oliver; Olga Rodríguez; Judit Grueso; Pilar Antón; Marta Guzmán; Claudia Aura; Paolo Nuciforo; Katti Jessen; Guillem Argilés; Rodrigo Dienstmann; Andrea Bertotti; Livio Trusolino; Judit Matito; Ana Vivancos; Irene Chicote; Héctor G Palmer; Josep Tabernero; Maurizio Scaltriti; José Baselga; Violeta Serra
Journal:  Clin Cancer Res       Date:  2015-08-13       Impact factor: 12.531

4.  Expression of Muscle-Specific Ribosomal Protein L3-Like Impairs Myotube Growth.

Authors:  Thomas Chaillou; Xiping Zhang; John J McCarthy
Journal:  J Cell Physiol       Date:  2016-01-14       Impact factor: 6.384

5.  Inducible expression of a disease-associated ELANE mutation impairs granulocytic differentiation, without eliciting an unfolded protein response.

Authors:  Bhavuk Garg; Hrishikesh M Mehta; Borwyn Wang; Ralph Kamel; Marshall S Horwitz; Seth J Corey
Journal:  J Biol Chem       Date:  2020-04-16       Impact factor: 5.157

6.  Global Inhibition with Specific Activation: How p53 and MYC Redistribute the Transcriptome in the DNA Double-Strand Break Response.

Authors:  Joshua R Porter; Brian E Fisher; Laura Baranello; Julia C Liu; Diane M Kambach; Zuqin Nie; Woo Seuk Koh; Ji Luo; Jayne M Stommel; David Levens; Eric Batchelor
Journal:  Mol Cell       Date:  2017-08-31       Impact factor: 17.970

7.  USP11 Enhances TGFβ-Induced Epithelial-Mesenchymal Plasticity and Human Breast Cancer Metastasis.

Authors:  Daniel A Garcia; Christina Baek; M Valeria Estrada; Tiffani Tysl; Eric J Bennett; Jing Yang; John T Chang
Journal:  Mol Cancer Res       Date:  2018-05-03       Impact factor: 5.852

8.  Neuregulin 1-activated ERBB4 interacts with YAP to induce Hippo pathway target genes and promote cell migration.

Authors:  Jonathan W Haskins; Don X Nguyen; David F Stern
Journal:  Sci Signal       Date:  2014-12-09       Impact factor: 8.192

9.  Structure/Function Analysis of Recurrent Mutations in SETD2 Protein Reveals a Critical and Conserved Role for a SET Domain Residue in Maintaining Protein Stability and Histone H3 Lys-36 Trimethylation.

Authors:  Kathryn E Hacker; Catherine C Fahey; Stephen A Shinsky; Yun-Chen J Chiang; Julia V DiFiore; Deepak Kumar Jha; Andy H Vo; Jordan A Shavit; Ian J Davis; Brian D Strahl; W Kimryn Rathmell
Journal:  J Biol Chem       Date:  2016-08-15       Impact factor: 5.157

10.  Whole-exome sequencing identifies mutated c12orf57 in recessive corpus callosum hypoplasia.

Authors:  Naiara Akizu; Nuri M Shembesh; Tawfeg Ben-Omran; Laila Bastaki; Asma Al-Tawari; Maha S Zaki; Roshan Koul; Emily Spencer; Rasim Ozgur Rosti; Eric Scott; Elizabeth Nickerson; Stacey Gabriel; Gilberto da Gente; Jiang Li; Matthew A Deardorff; Laura K Conlin; Margaret A Horton; Elaine H Zackai; Elliott H Sherr; Joseph G Gleeson
Journal:  Am J Hum Genet       Date:  2013-02-28       Impact factor: 11.025

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