Literature DB >> 21304721

The first special issue of Standards in Genomic Sciences from the Genomic Standards Consortium.

Dawn Field, Renzo Kottmann, Peter Sterk.   

Abstract

Entities:  

Year:  2010        PMID: 21304721      PMCID: PMC3035305          DOI: 10.4056/sigs.1493697

Source DB:  PubMed          Journal:  Stand Genomic Sci        ISSN: 1944-3277


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Face-to-face meetings play a central role in the birth and maturation of communities. Intensive workshops filled with presentations, discussions and working group meetings have always been at the heart of the activities of the Genomic Standards Consortium (GSC). Such work-driven meetings are a key way in which the GSC fulfils its mission. Similarly, meeting reports provide a key mechanism for preserving and disseminating the consensus built at such meetings as they describe the range of speakers and participants present, topics covered and key outcomes and priorities agreed upon by the community. This issue contains a total of nine meeting reports, all from workshops held between April and December 2010. The first four describe GSC sponsored events. The first overviews the GSC 9 workshop at the J. Craig Venter Institute (JCVI) in April 2010 [1]. This pivotal meeting in the history of the GSC was the first attempt to organize an open registration meeting (with registration fees) and drew over 90 participants, the largest GSC meeting to date. The second report overviews the GSC 10 workshop held at Argonne National Labs in October of 2010 that focused on the M5 project [2]. The next two reports describe “Metagenomics, Metadata and MetaAnalysis” (M3) workshops held at the Intelligent Systems in Molecular Biology [3] and the International Society for Microbial Ecology meetings [4], respectively in 2010. Such satellite meetings allow the GSC to introduce the consensus-products of the GSC to a wider audience and also to collect essential feedback on what the community needs. As of the GSC 8 workshop, all GSC presentations have also been recorded and uploaded to the SCIVEE site. The GSC is planning its next two workshops at the Wellcome Trust Genome Campus in Hinxton, UK in April 2011 and at the Max-Plank Institute for Marine Microbiology in Bremen, Germany in September 2011. This issue also contains the first five meeting reports in SIGS contributed by external communities. The first describes a workshop held by the wider genomic annotation community as a step towards organizing a “Critical Assessment of Functional Annotation Experiment” (CAFAE) competition [5]. The next two describe the birth and early efforts to co-ordinate a megasequencing project called the Earth Microbiome Project (EMP) [6,7]. The fourth is the inaugural meeting of the BioSharing community [8]. The fifth describes the second workshop of the “Minimum Information about a Biological or Biomedical” (MIBBI) initiative [9]. The GSC is pleased to be an active member of all of these projects. We sincerely hope this special issue of meeting reports will pave the way for meeting report contributions from a wider range of related communities dedicated to creating and maintaining consensus-driven science.
  9 in total

1.  The Earth Microbiome Project: Meeting report of the "1 EMP meeting on sample selection and acquisition" at Argonne National Laboratory October 6 2010.

Authors:  Jack A Gilbert; Folker Meyer; Janet Jansson; Jeff Gordon; Norman Pace; James Tiedje; Ruth Ley; Noah Fierer; Dawn Field; Nikos Kyrpides; Frank-Oliver Glöckner; Hans-Peter Klenk; K Eric Wommack; Elizabeth Glass; Kathryn Docherty; Rachel Gallery; Rick Stevens; Rob Knight
Journal:  Stand Genomic Sci       Date:  2010-12-25

2.  Meeting Report: Towards a Critical Assessment of Functional Annotation Experiment (CAFAE) for bacterial genome annotation.

Authors:  Owen White; Nikos Kyrpides
Journal:  Stand Genomic Sci       Date:  2010-11-29

3.  Meeting report: GSC M5 roundtable at the 13th International Society for Microbial Ecology meeting in Seattle, WA, USA August 22-27, 2010.

Authors:  Jack A Gilbert; Folker Meyer; Rob Knight; Dawn Field; Nikos Kyrpides; Pelin Yilmaz; John Wooley
Journal:  Stand Genomic Sci       Date:  2010-12-15

4.  Meeting Report from the Genomic Standards Consortium (GSC) Workshop 10.

Authors:  Elizabeth Glass; Folker Meyer; Jack A Gilbert; Dawn Field; Sarah Hunter; Renzo Kottmann; Nikos Kyrpides; Susanna Sansone; Lynn Schriml; Peter Sterk; Owen White; John Wooley
Journal:  Stand Genomic Sci       Date:  2010-12-25

5.  Meeting Report: BioSharing at ISMB 2010.

Authors:  Dawn Field; Susanna Sansone; Edward F Delong; Peter Sterk; Iddo Friedberg; Pascale Gaudet; Susanna Lewis; Renzo Kottmann; Lynette Hirschman; George Garrity; Guy Cochrane; John Wooley; Folker Meyer; Sarah Hunter; Owen White; Brian Bramlett; Susan Gregurick; Hilmar Lapp; Sandra Orchard; Philippe Rocca-Serra; Alan Ruttenberg; Nigam Shah; Chris Taylor; Anne Thessen
Journal:  Stand Genomic Sci       Date:  2010-12-04

6.  Meeting Report from the Second "Minimum Information for Biological and Biomedical Investigations" (MIBBI) workshop.

Authors:  Carsten Kettner; Dawn Field; Susanna-Assunta Sansone; Chris Taylor; Jan Aerts; Nigel Binns; Andrew Blake; Cedrik M Britten; Ario de Marco; Jennifer Fostel; Pascale Gaudet; Alejandra González-Beltrán; Nigel Hardy; Jan Hellemans; Henning Hermjakob; Nick Juty; Jim Leebens-Mack; Eamonn Maguire; Steffen Neumann; Sandra Orchard; Helen Parkinson; William Piel; Shoba Ranganathan; Philippe Rocca-Serra; Annapaola Santarsiero; David Shotton; Peter Sterk; Andreas Untergasser; Patricia L Whetzel
Journal:  Stand Genomic Sci       Date:  2010-12-25

7.  Meeting Report: Metagenomics, Metadata and MetaAnalysis (M3) at ISMB 2010.

Authors:  Dawn Field; Susanna Sansone; Edward F Delong; Peter Sterk; Iddo Friedberg; Renzo Kottmann; Lynette Hirschman; George Garrity; Guy Cochrane; John Wooley; Folker Meyer; Sarah Hunter; Owen White
Journal:  Stand Genomic Sci       Date:  2010-12-04

8.  Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project.

Authors:  Jack A Gilbert; Folker Meyer; Dion Antonopoulos; Pavan Balaji; C Titus Brown; Christopher T Brown; Narayan Desai; Jonathan A Eisen; Dirk Evers; Dawn Field; Wu Feng; Daniel Huson; Janet Jansson; Rob Knight; James Knight; Eugene Kolker; Kostas Konstantindis; Joel Kostka; Nikos Kyrpides; Rachel Mackelprang; Alice McHardy; Christopher Quince; Jeroen Raes; Alexander Sczyrba; Ashley Shade; Rick Stevens
Journal:  Stand Genomic Sci       Date:  2010-12-25

9.  Meeting Report from the Genomic Standards Consortium (GSC) Workshop 9.

Authors:  Tanja Davidsen; Ramana Madupu; Peter Sterk; Dawn Field; George Garrity; Jack Gilbert; Frank Oliver Glöckner; Lynette Hirschman; Eugene Kolker; Renzo Kottmann; Nikos Kyrpides; Folker Meyer; Norman Morrison; Lynn Schriml; Tatiana Tatusova; John Wooley
Journal:  Stand Genomic Sci       Date:  2010-12-04
  9 in total

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