Literature DB >> 21301473

The importance of phase information for human genomics.

Ryan Tewhey1, Vikas Bansal, Ali Torkamani, Eric J Topol, Nicholas J Schork.   

Abstract

Contemporary sequencing studies often ignore the diploid nature of the human genome because they do not routinely separate or 'phase' maternally and paternally derived sequence information. However, many findings - both from recent studies and in the more established medical genetics literature - indicate that relationships between human DNA sequence and phenotype, including disease, can be more fully understood with phase information. Thus, the existing technological impediments to obtaining phase information must be overcome if human genomics is to reach its full potential.

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Year:  2011        PMID: 21301473      PMCID: PMC3753045          DOI: 10.1038/nrg2950

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  91 in total

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Journal:  Am J Hum Genet       Date:  2010-10-08       Impact factor: 11.025

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Journal:  Am J Hum Genet       Date:  2010-02-12       Impact factor: 11.025

4.  Individual genomes on the horizon.

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Journal:  Nat Genet       Date:  2006-04-16       Impact factor: 38.330

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Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-13       Impact factor: 11.205

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Authors:  Dan He; Arthur Choi; Knot Pipatsrisawat; Adnan Darwiche; Eleazar Eskin
Journal:  Bioinformatics       Date:  2010-06-15       Impact factor: 6.937

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Authors:  Augustine Kong; Gisli Masson; Michael L Frigge; Arnaldur Gylfason; Pasha Zusmanovich; Gudmar Thorleifsson; Pall I Olason; Andres Ingason; Stacy Steinberg; Thorunn Rafnar; Patrick Sulem; Magali Mouy; Frosti Jonsson; Unnur Thorsteinsdottir; Daniel F Gudbjartsson; Hreinn Stefansson; Kari Stefansson
Journal:  Nat Genet       Date:  2008-09       Impact factor: 38.330

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Authors:  Samuel Levy; Granger Sutton; Pauline C Ng; Lars Feuk; Aaron L Halpern; Brian P Walenz; Nelson Axelrod; Jiaqi Huang; Ewen F Kirkness; Gennady Denisov; Yuan Lin; Jeffrey R MacDonald; Andy Wing Chun Pang; Mary Shago; Timothy B Stockwell; Alexia Tsiamouri; Vineet Bafna; Vikas Bansal; Saul A Kravitz; Dana A Busam; Karen Y Beeson; Tina C McIntosh; Karin A Remington; Josep F Abril; John Gill; Jon Borman; Yu-Hui Rogers; Marvin E Frazier; Stephen W Scherer; Robert L Strausberg; J Craig Venter
Journal:  PLoS Biol       Date:  2007-09-04       Impact factor: 8.029

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  104 in total

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Journal:  J Comput Biol       Date:  2012-06       Impact factor: 1.479

Review 3.  Annotating individual human genomes.

Authors:  Ali Torkamani; Ashley A Scott-Van Zeeland; Eric J Topol; Nicholas J Schork
Journal:  Genomics       Date:  2011-08-02       Impact factor: 5.736

4.  Genome assembly and haplotyping with Hi-C.

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Journal:  Nat Biotechnol       Date:  2013-12       Impact factor: 54.908

5.  Haplotype estimation using sequencing reads.

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Journal:  Genome Res       Date:  2011-08-03       Impact factor: 9.043

7.  Concurrent whole-genome haplotyping and copy-number profiling of single cells.

Authors:  Masoud Zamani Esteki; Eftychia Dimitriadou; Ligia Mateiu; Cindy Melotte; Niels Van der Aa; Parveen Kumar; Rakhi Das; Koen Theunis; Jiqiu Cheng; Eric Legius; Yves Moreau; Sophie Debrock; Thomas D'Hooghe; Pieter Verdyck; Martine De Rycke; Karen Sermon; Joris R Vermeesch; Thierry Voet
Journal:  Am J Hum Genet       Date:  2015-05-14       Impact factor: 11.025

8.  De novo assembly of a haplotype-resolved human genome.

Authors:  Hongzhi Cao; Honglong Wu; Ruibang Luo; Shujia Huang; Yuhui Sun; Xin Tong; Yinlong Xie; Binghang Liu; Hailong Yang; Hancheng Zheng; Jian Li; Bo Li; Yu Wang; Fang Yang; Peng Sun; Siyang Liu; Peng Gao; Haodong Huang; Jing Sun; Dan Chen; Guangzhu He; Weihua Huang; Zheng Huang; Yue Li; Laurent C A M Tellier; Xiao Liu; Qiang Feng; Xun Xu; Xiuqing Zhang; Lars Bolund; Anders Krogh; Karsten Kristiansen; Radoje Drmanac; Snezana Drmanac; Rasmus Nielsen; Songgang Li; Jian Wang; Huanming Yang; Yingrui Li; Gane Ka-Shu Wong; Jun Wang
Journal:  Nat Biotechnol       Date:  2015-05-25       Impact factor: 54.908

9.  A haplotype-based framework for group-wise transmission/disequilibrium tests for rare variant association analysis.

Authors:  Rui Chen; Qiang Wei; Xiaowei Zhan; Xue Zhong; James S Sutcliffe; Nancy J Cox; Edwin H Cook; Chun Li; Wei Chen; Bingshan Li
Journal:  Bioinformatics       Date:  2015-01-06       Impact factor: 6.937

10.  Probing meiotic recombination and aneuploidy of single sperm cells by whole-genome sequencing.

Authors:  Sijia Lu; Chenghang Zong; Wei Fan; Mingyu Yang; Jinsen Li; Alec R Chapman; Ping Zhu; Xuesong Hu; Liya Xu; Liying Yan; Fan Bai; Jie Qiao; Fuchou Tang; Ruiqiang Li; X Sunney Xie
Journal:  Science       Date:  2012-12-21       Impact factor: 47.728

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