Literature DB >> 21300899

Nanopatterned protein microrings from a diatom that direct silica morphogenesis.

André Scheffel1, Nicole Poulsen, Samuel Shian, Nils Kröger.   

Abstract

Diatoms are eukaryotic microalgae that produce species-specifically structured cell walls made of SiO(2) (silica). Formation of the intricate silica structures of diatoms is regarded as a paradigm for biomolecule-controlled self-assembly of three-dimensional, nano- to microscale-patterned inorganic materials. Silica formation involves long-chain polyamines and phosphoproteins (silaffins and silacidins), which are readily soluble in water, and spontaneously form dynamic supramolecular assemblies that accelerate silica deposition and influence silica morphogenesis in vitro. However, synthesis of diatom-like silica structure in vitro has not yet been accomplished, indicating that additional components are required. Here we describe the discovery and intracellular location of six novel proteins (cingulins) that are integral components of a silica-forming organic matrix (microrings) in the diatom Thalassiosira pseudonana. The cingulin-containing microrings are specifically associated with girdle bands, which constitute a substantial part of diatom biosilica. Remarkably, the microrings exhibit protein-based nanopatterns that closely resemble characteristic features of the girdle band silica nanopatterns. Upon the addition of silicic acid the microrings become rapidly mineralized in vitro generating nanopatterned silica replicas of the microring structures. A silica-forming organic matrix with characteristic nanopatterns was also discovered in the diatom Coscinodiscus wailesii, which suggests that preassembled protein-based templates might be general components of the cellular machinery for silica morphogenesis in diatoms. These data provide fundamentally new insight into the molecular mechanisms of biological silica morphogenesis, and may lead to the development of self-assembled 3D mineral forming protein scaffolds with designed nanopatterns for a host of applications in nanotechnology.

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Year:  2011        PMID: 21300899      PMCID: PMC3044418          DOI: 10.1073/pnas.1012842108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  25 in total

1.  [The determination of silicic acid in biological material].

Authors:  H BAUMANN
Journal:  Hoppe Seylers Z Physiol Chem       Date:  1960

2.  Silica immobilization of an enzyme through genetic engineering of the diatom Thalassiosira pseudonana.

Authors:  Nicole Poulsen; Cécile Berne; Jim Spain; Nils Kröger
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

3.  Whole-genome expression profiling of the marine diatom Thalassiosira pseudonana identifies genes involved in silicon bioprocesses.

Authors:  Thomas Mock; Manoj Pratim Samanta; Vaughn Iverson; Chris Berthiaume; Matthew Robison; Karie Holtermann; Colleen Durkin; Sandra Splinter Bondurant; Kathryn Richmond; Matthew Rodesch; Toivo Kallas; Edward L Huttlin; Francesco Cerrina; Michael R Sussman; E Virginia Armbrust
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-22       Impact factor: 11.205

4.  Silacidins: highly acidic phosphopeptides from diatom shells assist in silica precipitation in vitro.

Authors:  Stephan Wenzl; Robert Hett; Patrick Richthammer; Manfred Sumper
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

5.  Identification of proteins from a cell wall fraction of the diatom Thalassiosira pseudonana: insights into silica structure formation.

Authors:  Luciano G Frigeri; Timothy R Radabaugh; Paul A Haynes; Mark Hildebrand
Journal:  Mol Cell Proteomics       Date:  2005-10-05       Impact factor: 5.911

Review 6.  Silica biomineralization in diatoms: the model organism Thalassiosira pseudonana.

Authors:  Manfred Sumper; Eike Brunner
Journal:  Chembiochem       Date:  2008-05-23       Impact factor: 3.164

7.  From biosilicification to tailored materials: optimizing hydrophobic domains and resistance to protonation of polyamines.

Authors:  David J Belton; Siddharth V Patwardhan; Vadim V Annenkov; Elena N Danilovtseva; Carole C Perry
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-17       Impact factor: 11.205

Review 8.  Biomolecular self-assembly and its relevance in silica biomineralization.

Authors:  Christian Gröger; Katharina Lutz; Eike Brunner
Journal:  Cell Biochem Biophys       Date:  2007-10-11       Impact factor: 2.194

9.  Silica morphogenesis by alternative processing of silaffins in the diatom Thalassiosira pseudonana.

Authors:  Nicole Poulsen; Nils Kröger
Journal:  J Biol Chem       Date:  2004-08-10       Impact factor: 5.157

10.  A new calcium binding glycoprotein family constitutes a major diatom cell wall component.

Authors:  N Kröger; C Bergsdorf; M Sumper
Journal:  EMBO J       Date:  1994-10-03       Impact factor: 11.598

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  35 in total

1.  Cellular complexity captured in durable silica biocomposites.

Authors:  Bryan Kaehr; Jason L Townson; Robin M Kalinich; Yasmine H Awad; B S Swartzentruber; Darren R Dunphy; C Jeffrey Brinker
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-08       Impact factor: 11.205

2.  Small angle neutron scattering on an absolute intensity scale and the internal surface of diatom frustules from three species of differing morphologies.

Authors:  C J Garvey; M Strobl; A Percot; J Saroun; J Haug; W Vyverman; V A Chepurnov; J M Ferris
Journal:  Eur Biophys J       Date:  2013-02-03       Impact factor: 1.733

3.  A simple probabilistic model of submicroscopic diatom morphogenesis.

Authors:  L Willis; E J Cox; T Duke
Journal:  J R Soc Interface       Date:  2013-04-03       Impact factor: 4.118

4.  Infiltration of silica inside fibrillar collagen.

Authors:  Li-na Niu; Kai Jiao; Yi-pin Qi; Cynthia K Y Yiu; Heonjune Ryou; Dwayne D Arola; Ji-hua Chen; Lorenzo Breschi; David H Pashley; Franklin R Tay
Journal:  Angew Chem Int Ed Engl       Date:  2011-10-07       Impact factor: 15.336

Review 5.  Synthetic Morphogenesis.

Authors:  Brian P Teague; Patrick Guye; Ron Weiss
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-09-01       Impact factor: 10.005

6.  Live diatom silica immobilization of multimeric and redox-active enzymes.

Authors:  V C Sheppard; A Scheffel; N Poulsen; N Kröger
Journal:  Appl Environ Microbiol       Date:  2011-11-04       Impact factor: 4.792

7.  Biochemical Composition and Assembly of Biosilica-associated Insoluble Organic Matrices from the Diatom Thalassiosira pseudonana.

Authors:  Alexander Kotzsch; Damian Pawolski; Alexander Milentyev; Anna Shevchenko; André Scheffel; Nicole Poulsen; Andrej Shevchenko; Nils Kröger
Journal:  J Biol Chem       Date:  2015-12-28       Impact factor: 5.157

8.  A stable and efficient nuclear transformation system for the diatom Chaetoceros gracilis.

Authors:  Kentaro Ifuku; Dongyi Yan; Mado Miyahara; Natsuko Inoue-Kashino; Yoshiharu Y Yamamoto; Yasuhiro Kashino
Journal:  Photosynth Res       Date:  2014-10-09       Impact factor: 3.573

9.  Comparative Gene Analysis Focused on Silica Cell Wall Formation: Identification of Diatom-Specific SET Domain Protein Methyltransferases.

Authors:  Michiko Nemoto; Sayako Iwaki; Hisao Moriya; Yuki Monden; Takashi Tamura; Kenji Inagaki; Shigeki Mayama; Kiori Obuse
Journal:  Mar Biotechnol (NY)       Date:  2020-06-03       Impact factor: 3.619

10.  Pentalysine clusters mediate silica targeting of silaffins in Thalassiosira pseudonana.

Authors:  Nicole Poulsen; André Scheffel; Vonda C Sheppard; Patrick M Chesley; Nils Kröger
Journal:  J Biol Chem       Date:  2013-05-17       Impact factor: 5.157

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