Literature DB >> 21296748

Gobe: an interactive, web-based tool for comparative genomic visualization.

Brent S Pedersen1, Haibao Tang, Michael Freeling.   

Abstract

UNLABELLED: Gobe is a web-based tool for viewing comparative genomic data. It supports viewing multiple genomic regions simultaneously. Its simple text format and flash-based rendering make it an interactive, exploratory research tool. Gobe can be used without installation through our web service, or downloaded and customized with stylesheets and javascript callback functions. AVAILABILITY: Gobe is a flash application that runs in all modern web-browsers. The full source-code, including that for the online web application is available under the MIT license at: http://github.com/brentp/gobe. Sample applications are hosted at http://try-gobe.appspot.com/ and http://synteny.cnr.berkeley.edu/gobe-app/.

Mesh:

Year:  2011        PMID: 21296748     DOI: 10.1093/bioinformatics/btr056

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  3 in total

1.  SynTView - an interactive multi-view genome browser for next-generation comparative microorganism genomics.

Authors:  Pierre Lechat; Erika Souche; Ivan Moszer
Journal:  BMC Bioinformatics       Date:  2013-09-22       Impact factor: 3.169

2.  Unleashing the genome of brassica rapa.

Authors:  Haibao Tang; Eric Lyons
Journal:  Front Plant Sci       Date:  2012-07-31       Impact factor: 5.753

3.  Automated conserved non-coding sequence (CNS) discovery reveals differences in gene content and promoter evolution among grasses.

Authors:  Gina Turco; James C Schnable; Brent Pedersen; Michael Freeling
Journal:  Front Plant Sci       Date:  2013-07-02       Impact factor: 5.753

  3 in total

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