| Literature DB >> 21296744 |
Zan Pan1, Hua Yang, Peter S Reinach.
Abstract
Transient receptor potential (TRP) non-selective cation channels constitute a superfamily, which contains 28 different genes. In mammals, this superfamily is divided into six subfamilies based on differences in amino acid sequence homology between the different gene products. Proteins within a subfamily aggregate to form heteromeric or homomeric tetrameric configurations. These different groupings have very variable permeability ratios for calcium versus sodium ions. TRP expression is widely distributed in neuronal tissues, as well as a host of other tissues, including epithelial and endothelial cells. They are activated by environmental stresses that include tissue injury, changes in temperature, pH and osmolarity, as well as volatile chemicals, cytokines and plant compounds. Their activation induces, via intracellular calcium signalling, a host of responses, including stimulation of cell proliferation, migration, regulatory volume behaviour and the release of a host of cytokines. Their activation is greatly potentiated by phospholipase C (PLC) activation mediated by coupled GTP-binding proteins and tyrosine receptors. In addition to their importance in maintaining tissue homeostasis, some of these responses may involve various underlying diseases. Given the wealth of literature describing the multiple roles of TRP in physiology in a very wide range of different mammalian tissues, this review limits itself to the literature describing the multiple roles of TRP channels in different ocular tissues. Accordingly, their importance to the corneal, trabecular meshwork, lens, ciliary muscle, retinal, microglial and retinal pigment epithelial physiology and pathology is reviewed.Entities:
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Year: 2011 PMID: 21296744 PMCID: PMC3525231 DOI: 10.1186/1479-7364-5-2-108
Source DB: PubMed Journal: Hum Genomics ISSN: 1473-9542 Impact factor: 4.639
Figure 1Domain structure of the TRP superfamily. Five Group 1 TRP (TRPN is not expressed in mammals) (a) and two Group 2 TRP subfamilies (b) are listed. All subfamilies contain a six-transmembrane domain unit with a cation-permeable pore between domains I and II. Four such units are assembled as a hetero-or homotetramer to form TRP channels. Domain indications: ankyrin repeats (A), coiled-coil domain (cc), protein kinase domain (TRPM6/7 only), cation-permeable pore ( p), transmembrane (TM) domain, cation-permeable (+ + +), TRP domain (TRPC, TRPM only), large extracellular loop between TM I and II (TRPP, TRPML only). Adapted from Venkatachalam and Montell [5].
Human TRP genes
| TRP Gene | TRP Protein | Genome Accession Number | mRNA Accession Number | Gene Locus in Contig/Gene | Locus | # of Exons |
|---|---|---|---|---|---|---|
| TRPCl | NT_005832 | U31110 | 3300676-3384487 | 3q22-q24 | 13 | |
| TRPC3 | NT_016354 | U47050 | C 11488244-11542672 | 4q27 | 11 | |
| TRPC4 | NT_033922 | AF175406 | C 6785134-7018278 | 13q13.1-q13.2 | 13 | |
| TRPC5 | NT_025319 | AF054568 | C 2989179-3297641 | Xq23 | 10 | |
| TRPC6 | NT_009151 | AF080394 | C 4866094-4998380 | 11q21-q22 | 13 | |
| TRPC7 | NT_037664 | AJ272034 | C 424567-568641 | 5q31.1 | 11 | |
| TRPM1 | NT_010363 | AF071787 | C 2085178-2185564 | 15q13-q14 | 27 | |
| TRPM2 | NT_011515 | AB001535 | 1085877-1175698 | 21q22.3 | 32 | |
| TRPM3 | NT_008580 | AJ505025 | C 2314499-2399547 | 9q21.11 | 11 | |
| TRPM4 | NT_011109 | AF497623 | 11792968-11847007 | 19q13.32 | 29 | |
| TRPM5 | NT_033238 | AF177473 | C 573099-591648 | 11p15.5 | 24 | |
| TRPM6 | NT_008580 | AF448232 | C 6501941-6667540 | 9q21.13 | 39 | |
| TRPM7 | NT_010194 | AF346629 | C 5824294-5950796 | 15q21 | 39 | |
| TRPM8 | NT_005120 | AY090109 | 756514-858635 | 2q37.1 | 25 | |
| TRPVl | NT_010692 | AY131289 | C 2321912-2365875 | 17p13.3 | 17 | |
| TRPV2 | NT_010718 | AJ487963 | 9021374-9042801 | 17p11.2 | 15 | |
| TRPV3 | NT_010692 | AY118268 | C 2269657-2314460 | 17pl3.3 | 18 | |
| TRPV4 | NT_009770 | AJ296305 | C 790403-840721 | 12q23-q24.1 | 15 | |
| TRPV5 | NT_007914 | AJ271207 | C 3218677-3244315 | 7q35 | 15 | |
| TRPV6 | NT_007914 | AF365927 | C 3182370-3196917 | 7q33-q34 | 15 | |
| TRPA1 | NT_008183.18 | Y10601 | C24841572-24786439 | 8q13 | 27 | |
| TRPP2 | NT_006204 | U50928 | 7643751-7713856 | 4q21-23 | 15 | |
| TRPP3 | NT_030059 | AF073481 | C 7312540-7354872 | 10q24 | 16 | |
| TRPP5 | NT_016714 | AF118125 | 365617-420393 | 5q31 | 14 | |
| TRPML1 | NT_077812.2 | AF287269 | 191108-203260 | 19p13.3-p13.2 | 13 | |
| TRPML2 | NT_032977.7 | AY083533 | 39282589-39210261 | 1p22 | 13 | |
| TRPML3 | NC_000001 | AF475085 | C85226190-85195787 | lp22.3 | 13 |
Adapted from Birnbaumer et al. [10]
*TRPP1 accession number used for multiple sequence alignment analysis.
Figure 2The dendrogram of the TRP superfamily in humans. Random proteins bound to the plasma membrane (ie EGF receptor, EGFR), endoplasmic reticulum (ie calreticulin precursor, CP), mitochondria (thioredoxin reductase, TR), nuclear membrane (ie inner nuclear membrane protein, INMP) and a cystolic protein (ie mitogen-activated protein kinase 1, MAPK1) were selected to determine if PKD and MCOLN are evolutionarily related to TRP or the results of convergent evolution. Note that PKD and MCOLN belong to TRP superfamilies, since random genes extend from branches distinct from the TRP superfamily.