Literature DB >> 21296039

Sequence determinants of histone-DNA binding preferences: comment on "Cracking the chromatin code: precise rule of nucleosome positioning" by Edward N. Trifonov.

Alexandre V Morozov1.   

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Year:  2011        PMID： 21296039      PMCID： PMC3056114          DOI： 10.1016/j.plrev.2011.01.013

Source DB:  PubMed          Journal:  Phys Life Rev        ISSN： 1571-0645            Impact factor:   11.025


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  9 in total

1.  The structure of DNA in the nucleosome core.

Authors:  Timothy J Richmond; Curt A Davey
Journal:  Nature       Date:  2003-05-08       Impact factor: 49.962

2.  Single-base resolution nucleosome mapping on DNA sequences.

Authors:  I Gabdank; D Barash; E N Trifonov
Journal:  J Biomol Struct Dyn       Date:  2010-08

3.  High-throughput sequencing reveals a simple model of nucleosome energetics.

Authors:  George Locke; Denis Tolkunov; Zarmik Moqtaderi; Kevin Struhl; Alexandre V Morozov
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-17       Impact factor: 11.205

Review 4.  Cracking the chromatin code: precise rule of nucleosome positioning.

Authors:  Edward N Trifonov
Journal:  Phys Life Rev       Date:  2011-01-19       Impact factor: 11.025

5.  Flexibility and constraint in the nucleosome core landscape of Caenorhabditis elegans chromatin.

Authors:  Steven M Johnson; Frederick J Tan; Heather L McCullough; Daniel P Riordan; Andrew Z Fire
Journal:  Genome Res       Date:  2006-10-12       Impact factor: 9.043

6.  G+C content dominates intrinsic nucleosome occupancy.

Authors:  Desiree Tillo; Timothy R Hughes
Journal:  BMC Bioinformatics       Date:  2009-12-22       Impact factor: 3.169

7.  The DNA-encoded nucleosome organization of a eukaryotic genome.

Authors:  Noam Kaplan; Irene K Moore; Yvonne Fondufe-Mittendorf; Andrea J Gossett; Desiree Tillo; Yair Field; Emily M LeProust; Timothy R Hughes; Jason D Lieb; Jonathan Widom; Eran Segal
Journal:  Nature       Date:  2008-12-17       Impact factor: 49.962

8.  Using DNA mechanics to predict in vitro nucleosome positions and formation energies.

Authors:  Alexandre V Morozov; Karissa Fortney; Daria A Gaykalova; Vasily M Studitsky; Jonathan Widom; Eric D Siggia
Journal:  Nucleic Acids Res       Date:  2009-06-09       Impact factor: 16.971

9.  Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo.

Authors:  Yong Zhang; Zarmik Moqtaderi; Barbara P Rattner; Ghia Euskirchen; Michael Snyder; James T Kadonaga; X Shirley Liu; Kevin Struhl
Journal:  Nat Struct Mol Biol       Date:  2009-07-20       Impact factor: 15.369
  9 in total

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