Literature DB >> 21293950

Modeling invasive species spread in Lake Champlain via evolutionary computations.

B M Osei1, C D Ellingwood, J P Hoffmann, D E Bentil.   

Abstract

We use a reaction diffusion equation, together with a genetic algorithm approach for model selection to develop a general modeling framework for biological invasions. The diffusion component of the reaction diffusion model is generalized to include dispersal and advection. The reaction component is generalized to include both linear and non-linear density dependence, and Allee effect. A combination of the reaction diffusion and genetic algorithm is able to evolve the most parsimonious model for invasive species spread. Zebra mussel data obtained from Lake Champlain, which demarcates the states of New York and Vermont, is used to test the appropriateness of the model. We estimate the minimum wave spread rate of Zebra mussels to be 22.5 km/year. In particular, the evolved models predict an average northward advection rate of 60.6 km/year (SD ± 1.9), which compares very well with the rate calculated from the known hydrologic residence time of 60 km/year. A combination of a reaction diffusion model and a genetic algorithm is, therefore, able to adequately describe some of the hydrodynamic features of Lake Champlain and the spread of a typical invasive species--Zebra mussels within the lake.

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Year:  2011        PMID: 21293950     DOI: 10.1007/s12064-011-0122-3

Source DB:  PubMed          Journal:  Theory Biosci        ISSN: 1431-7613            Impact factor:   1.919


  5 in total

1.  Automated phylogenetic detection of recombination using a genetic algorithm.

Authors:  Sergei L Kosakovsky Pond; David Posada; Michael B Gravenor; Christopher H Woelk; Simon D W Frost
Journal:  Mol Biol Evol       Date:  2006-07-03       Impact factor: 16.240

2.  Analysis of a Schnute postulate-based unified growth model for model selection in evolutionary computations.

Authors:  D E Bentil; B M Osei; C D Ellingwood; J P Hoffmann
Journal:  Biosystems       Date:  2006-11-24       Impact factor: 1.973

3.  GARD: a genetic algorithm for recombination detection.

Authors:  Sergei L Kosakovsky Pond; David Posada; Michael B Gravenor; Christopher H Woelk; Simon D W Frost
Journal:  Bioinformatics       Date:  2006-11-16       Impact factor: 6.937

4.  Evolutionary model selection with a genetic algorithm: a case study using stem RNA.

Authors:  Sergei L Kosakovsky Pond; Frank V Mannino; Michael B Gravenor; Spencer V Muse; Simon D W Frost
Journal:  Mol Biol Evol       Date:  2006-10-12       Impact factor: 16.240

5.  Adapting operator settings in genetic algorithms.

Authors:  A Tuson; P Ross
Journal:  Evol Comput       Date:  1998       Impact factor: 3.277

  5 in total

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