Effectiveness of AS03 adjuvanted pandemic H1N1 vaccine: case-control evaluation based on sentinel surveillance system in Canada, autumn 2009.

OBJECTIVE: To assess the effectiveness of the pandemic influenza A/H1N1 vaccine used in Canada during autumn 2009.
DESIGN: Test negative incident case-control study based on sentinel physician surveillance system.
SETTING: Community based clinics contributing to sentinel networks in British Columbia, Alberta, Ontario, and Quebec, Canada. PARTICIPANTS: 552 patients who presented to a sentinel site within seven days of onset of influenza-like illness during the primary analysis period between 8 November and 5 December 2009; participants were mostly (>80%) children and adults under 50 years old.
INTERVENTIONS: Monovalent AS03 adjuvanted pandemic influenza A/H1N1 vaccine as the predominant formulation (>95%) distributed in Canada. MAIN OUTCOME MEASURES: Vaccine effectiveness calculated as 1-(odds ratio for influenza in vaccinated (received pandemic H1N1 vaccine at least two weeks before onset of influenza-like illness) versus unvaccinated participants), with adjustment for age, comorbidity, province, timeliness of specimen collection, and week of illness onset. Sensitivity analyses explored the influence of varying analysis periods between 1 November and 31 December, receipt of trivalent seasonal influenza vaccine, and restriction to participants without comorbidity.
RESULTS: During the primary analysis period, pandemic H1N1 was detected by reverse transcription polymerase chain reaction in 209/552 (38%) participants; rates were highest in children and young adults (40%) and lowest in people aged 65 or over (9%). Among the 209 cases, 35 (17%) reported comorbidity compared with 80/343 (23%) controls. Two (1%) cases had received pandemic H1N1 vaccine at least two weeks before the onset of illness, compared with 58/343 (17%) controls, all single dose. Adjusted vaccine effectiveness overall was 93% (95% confidence interval 69% to 98%). High estimates of vaccine protection-generally at least 90%-were maintained across most sensitivity analyses.
CONCLUSIONS: Although limited by a small number of vaccine failures, this study suggests that the monovalent AS03 adjuvanted vaccine used in Canada during autumn 2009 was highly effective in preventing medically attended, laboratory confirmed pandemic H1N1 illness, with reference in particular to a single dose in children and young adults.

Introduction

In Canada, public health authorities sought to immunise the population against pandemic influenza A/H1N1 during the autumn of 2009. They selected a monovalent AS03 adjuvanted product as the primary formulation for distribution in Canada (about 23 million doses; 95%). A second unadjuvanted product made up most of the remaining vaccine distributed (about 1.1 million doses; <5%) and was targeted primarily at women in the first half of pregnancy. Both products were domestically manufactured in Laval, Quebec, Canada and distributed by GlaxoSmithKline. A small quantity of unadjuvanted vaccine was also supplied by CSL Biotherapies from Australia (about 200 000 doses; <1%). Canada procured enough pandemic vaccine to immunise the entire population free of charge. Supply was initially limited, however, requiring sequencing of roll-out of vaccine (web appendix A). In participating provinces, the first target groups—typically consisting of very young children, pregnant women, and people aged over 65 with comorbidity—began receiving vaccine on 26 October 2009 (week 43). Vaccine was made available to sequential groups over the ensuing four weeks and finally to all members of the population starting from 19-25 November 2009 (weeks 46-47). Some people who did not belong to sequenced groups may have received vaccine before this date, at the discretion of immunisation providers.

Pre-marketing immunogenicity trials in Europe, Japan, and North America showed that a single dose of the AS03 adjuvanted vaccine produced in Canada was highly immunogenic.1 Fold rises in geometric mean titres after a single dose were substantially above thresholds specified by the European Agency for the Evaluation of Medicinal Products (EMEA) for approval of seasonal vaccines.2 Results from these trials among population groups including children, young adults, and adults aged over 60 showed seroprotection rates exceeding 90%.1 3 4 A randomised trial of children aged 6 months to 12 years (n=937) showed that AS03 adjuvanted pandemic H1N1 vaccine was more immunogenic than a non-adjuvanted whole virus formulation, especially among children under 3 years of age.5

One the basis of these findings, health authorities anticipated that a single dose of the AS03 adjuvanted pandemic H1N1 vaccine administered in Canada would be highly protective in all age groups. Several caveats to the interpretation of immunogenicity data exist, however. Firstly, quantification of immunogenicity is typically based on the haemagglutination inhibition assay, which may not be an accurate measure of functional antibody response.6 Secondly, seroprotective thresholds cited by the EMEA for the approval of seasonal influenza vaccines have not been specifically assessed for the novel pandemic virus.2 Thirdly, trials of immunogenicity assess antibody response to the specific reference strain of vaccine selected as that considered most likely to dominate. The pool of circulating viruses may instead include a mix of variants, resulting in reduced clinical effectiveness. Although viruses detected globally through the 2009-10 influenza surveillance period mostly retained a close match to the pandemic vaccine component,7 sampling may not be fully representative of circulating strains. Finally, the number of participants included in pre-marketing immunogenicity trials, especially among children, was small and details of the characteristics of participants were inadequate to enable broad and reliable generalisation to the full population immunised.1 3 4

For the above reasons, approval of pandemic vaccine based on pre-marketing immunogenicity results was accompanied in several countries by the expectation that the effectiveness of the vaccine would also be assessed with post-marketing epidemiological methods. Here, we report estimates of the effectiveness of the AS03 adjuvanted pandemic H1N1 vaccine most used in Canada during the autumn of 2009 based on Canada’s well established sentinel surveillance system and predicated on a test negative incident case-control design.

Methods

Sentinel vaccine effectiveness monitoring system

As previously described, networks of sentinel physicians in British Columbia, Alberta, Quebec, and Ontario contribute to influenza surveillance and monitoring of vaccine effectiveness annually in Canada.8 9 10 11 During the pandemic, and as part of surveillance activities, sentinel physicians were specifically exempt from restrictions on testing that applied to clinicians outside the network. Sentinel physicians are provided with kits for monitoring vaccine effectiveness to submit respiratory specimens (nasal or nasopharyngeal) for influenza testing accompanied by epidemiological information collected from eligible consenting patients. Patients are eligible if they present to one of more than 500 contributing community based physicians within seven days of onset of influenza-like illness. Influenza-like illness is defined as the acute onset of fever and cough and one or more of sore throat, myalgia, arthralgia, and prostration. Clinical discretion is incorporated into the decision to test. All participants gave informed oral consent to be included in vaccine effectiveness monitoring, and this was documented on the requisition. Only specimens accompanied by confirmation of consent and complete information on the questionnaire are included in the analysis of vaccine effectiveness.

Information collected about immunisation status included the type (adjuvanted or unadjuvanted) and number of doses of 2009-10 pandemic vaccine received and whether the last dose was at least two weeks before the onset of illness. The questionnaire also captured the presence (yes/no to any) of one or more of the following high risk chronic conditions defined by the National Advisory Committee on Immunization: heart, lung, renal, metabolic, blood, and immune conditions or conditions that compromise the management of respiratory secretions and increase the risk of aspiration.12 Information on receipt of trivalent inactivated influenza vaccine during the 2009-10, 2008-9, or 2007-8 seasons was also collected. Immunisation registries do not exist in most provinces of Canada, so the vaccine status based on patients’ report cannot be further verified.

Vaccines

Arepanrix (GlaxoSmithKline) is a monovalent AS03 adjuvanted and formalin inactivated deoxycholate split virion product manufactured in Laval, Quebec. It made up about 95% of the pandemic H1N1 vaccine distributed in Canada during the autumn 2009 immunisation campaign. A 0.5 mL dose of Arepanrix contained 3.75 µg haemagglutinin derived from A/California/7/2009,NYMC X-179A as the representative pandemic influenza A/H1N1 antigen and was administered intramuscularly.1 For this vaccine, adjuvant and antigen were packaged separately and required mixing before administration. The product monograph specified a 0.25 mL dose of the adjuvanted vaccine for children aged 6 months to 9 years and a 0.5 mL dose for older children and adults.1 National guidance documents initially suggested a two dose schedule spaced three weeks apart for children aged 6 months to 9 years,13 but decisions about that were subsequently adjusted at the provincial level owing to the availability, sequencing, and roll-out of vaccine in relation to the evolving epidemic curve. All unadjuvanted vaccines used in Canada were also monovalent and formalin inactivated, sodium deoxycholate or sodium taurodeoxycholate (CSL Panvax) split products,14 15 16 containing 15 µg haemagglutinin of the same antigen per 0.5 mL dose administered intramuscularly. Seasonal 2009-10 trivalent inactivated influenza vaccine, supplied by two manufacturers (domestically produced Fluviral, GlaxoSmithKline; and imported Vaxigrip, Sanofi-Pasteur), was also available in Canada.17 18 As recommended by the World Health Organization, the 2009-10 seasonal vaccine contained 15 µg haemagglutinin as split product derived from each of A/Brisbane/59/2007(H1N1)-like, A/Brisbane/10/2007(H3N2)-like, and B/Brisbane/60/2008(Victoria lineage)-like antigens.19 Administration of seasonal influenza vaccine was delayed in most provinces of Canada pending the availability of pandemic vaccine, but it could be administered concomitantly in the opposite limb.12

Laboratory identification

The provincial laboratory of each participating province tested for influenza viruses by real time reverse transcription polymerase chain reaction according to established protocols (web appendix B).

Vaccine effectiveness analysis

We estimated the effectiveness of vaccine by the test negative incident case-control design as previously described.10 11 Cases were participants in whom pandemic influenza A/H1N1 was detected; controls tested negative for influenza A and B. Because influenza vaccine is recommended only for people aged at least 6 months, younger participants and those with information on age missing were excluded. A consensus view is that a period of at least 14 days is needed to achieve a protective concentration of antibody after influenza vaccination, but this timeline may vary.20 Because the question related to the interval between onset of influenza-like illness and immunisation was dichotomised at two weeks, we could not further explore the timeline to protection. We thus excluded patients immunised less than two weeks before the onset of illness. However, we also explored vaccine effectiveness by including these patients in the vaccinated and unvaccinated categories.

Vaccine became available during week 43, and influenza activity peaked in week 44 with little activity after week 48 (figure). We thus selected weeks 45-48 as the primary analysis period. Because uptake of pandemic vaccine was evolving over the analysis period (figure), estimates of coverage cannot be derived from this study. For this reason also, we explored an element of time in models of estimates of vaccine effectiveness.

Pandemic H1N1 detections, and cumulative proportion vaccinated against pandemic H1N1 among cases and controls, by week (n=3898). Excludes specimens from patients who failed to meet the influenza-like illness case definition or had unknown status; specimens collected >7 days after influenza-like illness onset or with unknown interval; and patients with chronic conditions unknown, age unknown, or influenza test results unavailable or inconclusive on typing. One specimen positive for seasonal A/H1N1 (week 46) and four positive for seasonal A/H3N2 (weeks 33, 41, 44, and 50) are not represented on graph. Primary analysis period captures week 45 (8 November) to week 48 (5 December). Secondary analysis period captures week 44 (1 November) to week 52 (31 December). Cumulative percentages for patients vaccinated ≥2 weeks before illness onset exclude from numerator and denominator those vaccinated <2 weeks before illness onset. Figure shows cumulative percentages vaccinated from week 43 that are not directly comparable to proportions shown in table 3 for weeks 45-48

We used logistic regression to estimate odds ratios for the effect of pandemic H1N1 vaccine on medically attended, laboratory confirmed pandemic influenza A/H1N1 infection overall and among participants under 50 years of age through sequential models with adjustment for age (6 months to 9 years, 10-19 years, 20-49 years, and ≥50 years), chronic conditions (yes/no), province (British Columbia, Alberta, Ontario, or Quebec), timeliness of medical visit (≤4 days or >4 days from the onset of influenza-like illness), and week of onset of illness. We chose age categories on the basis of recommendations on paediatric vaccine dose/schedule that differed above and below 9 years of age, as well as considerations related to pandemic H1N1 risk differential, recognising that fewer cases were reported among older adults. Sex was not influential and was not included in any of the models. We calculated vaccine effectiveness as (1−odds ratio)×100.21 In sensitivity analyses, we explored the effect of varying analysis periods between weeks 44 and 52, varying definitions of vaccine status based on interval in relation to illness onset, adjustment for day (rather than week) of illness onset, receipt of seasonal influenza vaccine, and restriction to participants without comorbidity.

Results

Influenza profile

The figure shows the epidemic curve of influenza test result by onset of illness. During the primary analysis period between week 45 (8 November) and week 48 (5 December), 867 specimens were submitted. Because of a delay in submission for ethics board approval in Ontario, sentinel physicians in that province did not have access to the revised 2009-10 questionnaire until after 20 November (week 47). For this reason, a substantial proportion of specimens from Ontario were submitted without pandemic H1N1 vaccine status recorded and were thus excluded from the analysis. Overall characteristics of patients excluded owing to missing pandemic H1N1 vaccination status were similar to those of patients included in the analyses (data not shown). After we applied inclusion and exclusion criteria, 552 participants were available for the primary analysis period (table 1).

Table 1

 Inclusion and exclusion of participants for specimens submitted during primary analysis period spanning onset of illness from week 45 (8 November 2009) to week 48 (5 December 2009)

Exclusion criteria	No excluded	No included
Specimen submitted from consenting patients	0	866
Influenza-like illness presentation not met or unknown	31	835
Specimen collected >7 days after onset of influenza-like illness* or interval unknown	22	813
Chronic conditions unknown	63	750
Age unknown or <6 months	7	743
Influenza RT-PCR results unavailable or inconclusive	6	737
Pandemic H1N1 vaccine status missing or unknown	136†	601
Pandemic H1N1 vaccine received <2 weeks before onset of influenza-like illness*	49	552
Contributed to analysis	0	552

RT-PCR=reverse transcription polymerase chain reaction.

*Defined as acute onset of fever and cough and one or more of sore throat, arthralgia, myalgia, and prostration.

†Because of delay in submission for annual ethics approval in Ontario, sentinel physicians in that province did not have access to revised 2009-10 questionnaire until after 20 November (week 47); 75/122 of specimens from Ontario had unknown pandemic H1N1 vaccine status and were excluded from analysis.

Overall during the primary analysis period, 209 (38%) specimens were positive for pandemic H1N1 and no seasonal strains were detected (table 2). Influenza positivity varied by province and by week of analysis; 145/263 (55%), 57/144 (40%), 20/92 (22%), and 14/67 (21%) sentinel specimens were positive over successive weeks 45-48. During the extended secondary analysis period spanning weeks 44-52, 993 specimens met the inclusion criteria, pandemic H1N1 was diagnosed in 411 (41%), and A/H3N2 was detected in 2 (0.2%) specimens, both from Quebec. No other seasonal influenza viruses were detected.

Table 2

 Laboratory profile of specimens included during primary analysis period spanning onset of illness from week 45 (8 November 2009) to week 48 (5 December 2009). Values are numbers (percentages)

Specimen included	Alberta (n=96)	British Columbia (n=209)	Ontario (n=33)	Quebec (n=217)	Total (n=555)
Influenza negative	66 (69)	133 (64)	31 (94)	113 (52)	343 (62)
Influenza positive:	30 (31)	76 (36)	2 (6)	104 (48)	212 (38)
A positive	30 (100)	76 (100)	2 (100)	104 (100)	212 (100)
B positive	0 (0)	0 (0)	0 (0)	0 (0)	0 (0)
Influenza A positive:
A/H1N1	0 (0)	0 (0)	0 (0)	0 (0)	0 (0)
A/3N2	0 (0)	0 (0)	0 (0)	0 (0)	0 (0)
Pandemic A/H1N1	30 (100)	76 (100)	2 (100)	101 (97)	209 (99)
Subtype unknown	0 (0)	0 (0)	0 (0)	3 (3)	3 (1)

Participant profile

Table 3 shows the distribution of detection of pandemic A/H1N1 by sex, age, province, chronic conditions, and vaccine status. The distribution of characteristics was similar between the primary and secondary analysis periods (not shown). Young adults aged 20-49 years made up the greatest proportion of participants (44%), followed by children aged 6 months to 19 years (39%); fewer older adults aged 50-64 (12%) or 65 and over (4%) were included. The proportion of patients who tested positive for pandemic H1N1 varied by age; it was highest in those aged 10-19 years (42%), 6 months to 9 years (41%), and 20-49 years (40%); lower in adults aged 50-64 years (30%); and lowest in people aged 65 years or over (9%) (P=0.02). Overall, cases were slightly younger than controls. The proportion with chronic conditions was slightly higher among controls than among cases (23% v 17%; P=0.06) and increased with age but was generally comparable to the proportion observed for controls during previous seasons (14-23%) and to estimates from the Canadian Community Health Survey (15-20%).9 10 11 22 The proportion immunised with 2008-9 seasonal vaccine among controls (28%) was slightly lower than but comparable to that reported in a previous publication (33%) and by the Canadian Community Health Survey (32%).11 23 A detailed comparison of characteristics between controls who did and did not receive the pandemic H1N1 vaccine is also shown in web appendix C.

Table 3

 Participants’ profile for primary analysis period spanning onset of illness from week 45 (8 November 2009) to week 48 (5 December 2009). Values are numbers (column percentages)

Covariates	Pandemic H1N1 test negative control (n=343)	Pandemic H1N1 test positive case (n=209)	Overall (n=552)
Age category:
6 months to 9 years	71 (21)	50 (24)	121 (22)
10-19 years	56 (16)	40 (19)	96 (17)
20-49 years	148 (43)	97 (46)	245 (44)
50-64 years	47 (14)	20 (10)	67 (12)
≥65 years	21 (6)	2 (1)	23 (4)
Median (range) age (years)	27 (<1-88)	22 (<1-68)	24 (<1-88)
Female sex	200 (58)	93 (45)	293 (53)
Chronic conditions	80 (23)	35 (17)	115 (21)
Province:
Alberta	66 (19)	30 (14)	96 (17)
British Columbia	133 (39)	76 (36)	209 (38)
Ontario	31 (9)	2 (1)	33 (6)
Quebec	113 (33)	101 (48)	214 (39)
Pandemic H1N1 vaccinated*	58 (17)	2 (1)	60 (11)
2009-10 seasonal vaccine:
Not vaccinated	297 (93)	191 (97)	488 (94)
Vaccinated	24 (7)	5 (3)	29 (6)
2008-9 seasonal vaccine:
Not vaccinated	213 (72)	158 (84)	371 (77)
Vaccinated†	83 (28)	29 (16)	112 (23)
Specimen collection interval:
≤4 days after illness onset	297 (87)	190 (91)	487 (88)
5-7 days after illness onset	46 (13)	19 (9)	65 (12)
Median (range) days	2 (0-7)	2 (0-7)	2 (0-7)
Pandemic H1N1 vaccination by age:
6 months to 9 years	22/71 (31)	1/50 (2)	23/121 (19)
10-19 years	3/56 (5)	0/40 (0)	3/96 (3)
20-49 years	21/148 (14)	1/97 (1)	22/245 (9)
50-64 years	11/47 (23)	0/20 (0)	11/67 (16)
≥65 years	1/21 (5)	0/2 (0)	1/23 (4)
Chronic conditions by age:
6 months to 9 years	11/71 (15)	6/50 (12)	17/121 (14)
10-19 years	8/56 (14)	9/40 (23)	17/96 (18)
20-49 years	29/148 (20)	12/97 (12)	41/245 (17)
50-64 years	18/47 (38)	7/20 (35)	25/67 (37)
≥65 years	14/21 (67)	1/2 (50)	15/23 (65)
With chronic conditions:
Not pandemic H1N1 vaccinated	59 (74)	34 (97)	93 (81)
Pandemic H1N1 vaccinated	21 (26)	1 (3)	22 (19)
Without chronic conditions:
Not pandemic H1N1 vaccinated	226 (86)	173 (99)	399 (91)
Pandemic H1N1 vaccinated	37 (14)	1 (1)	38 (9)
Interval to specimen collection ≤4 days:
Not pandemic H1N1 vaccinated	251 (85)	188 (99)	439 (90)
Pandemic H1N1 vaccinated	46 (15)	2 (1)	48 (10)
Interval to specimen collection 5-7 days:
Not pandemic H1N1 vaccinated	34 (74)	19 (100)	53 (82)
Pandemic H1N1 vaccinated	12 (26)	0 (0)	12 (18)

*Received vaccine ≥2 weeks before onset of illness; excludes from numerator and denominator those immunised <2 weeks before onset.

†Excludes children too young to have received 2008-9 seasonal vaccine.

Pandemic H1N1 was detected in a greater proportion of specimens collected within four days of onset of illness (190/487; 39%) compared with specimens collected at 5-7 days (19/65; 29%) (P=0.13). The proportion of cases (190/209; 91%) and controls (297/343; 87%) whose specimens were collected at or before four days was comparable (P=0.13) and did not vary among those with (99/115; 86%) or without (388/437; 89%) chronic conditions (P=0.42); it did vary slightly among vaccinated (48/60; 80%) compared with unvaccinated participants (439/492; 89%) (P=0.036) (table 3).

Immunisation profile

During the primary analysis period, 11% (60/552) of participants reported receipt of pandemic H1N1 vaccine at least two weeks before onset of illness. The proportion who reported receipt of pandemic H1N1 vaccine varied with age and comorbidity (table 3). Information on the type of vaccine received was recorded by only 21/60 (35%) vaccine recipients, but all reported receiving the adjuvanted formulation. During the secondary analysis period, 52/108 (48%) vaccinated participants reported the type of vaccine they had received, and of these 96% (50/52) reported receiving the adjuvanted formulation. During the primary analysis period, all vaccinated participants reported having received a single dose. During the secondary analysis period, two children (4 and 8 years of age) reported two dose immunisation.

During the primary analysis period, just two vaccinated cases were identified (table 3). One of the two vaccine failures was a healthy 9 year old child from Quebec with onset of influenza-like illness in mid-November. The other was a young adult with underlying comorbidity from British Columbia with onset of illness in the second half of November. Only 29/517 (6%) participants reported receipt of the 2009-10 seasonal vaccine, and of these 13 (45%) had also received the pandemic H1N1 vaccine.

Vaccine effectiveness estimates

Table 4 provides estimates of vaccine effectiveness overall and among participants under 50 years of age for the primary analysis period with and without adjustment, followed by sensitivity analyses and restrictions applied to that period. It also gives estimates for varying intervals within the secondary analysis period. The crude estimate of vaccine effectiveness during the primary analysis period was 95% (95% confidence interval 80% to 99%), and this changed only slightly with full adjustment to 93% (69% to 98%).

Table 4

 Effectiveness of vaccine against medically attended, laboratory confirmed pandemic H1N1, including additional sensitivity analyses

	Vaccine effectiveness* (95% CI) (No of cases; No of controls)
	Overall	Aged <50 years
Covariates in primary analysis—weeks 45-48 (8 November to 5 December 2009)
Unadjusted	95.3 (80.3 to 98.9) (209; 343)	94.6 (77.5 to 98.7) (187; 275)
Chronic conditions (yes/no)	95.1 (79.5 to 98.8) (209; 343)	94.6 (77.3 to 98.7) (187; 275)
Age†	95.6 (81.4 to 98.9) (209; 343)	95.0 (79.0 to 98.8) (187; 275)
Province (BC, AB, ON, QC)	95.2 (80.1 to 98.9) (209; 343)	94.5 (76.9 to 98.7) (187; 275)
Specimen collection interval (≤4/>4 days)	95.1 (79.9 to 98.8) (209; 343)	94.6 (77.2 to 98.7) (187; 275)
Week of illness onset	93.2 (71.5 to 98.4) (209; 343)	91.5 (63.9 to 98.0) (187; 275)
Age and chronic conditions†	95.5 (81.1 to 98.9) (209; 343)	95.0 (78.8 to 98.8) (187; 275)
Age, chronic conditions, province†	95.5 (81.0 to 98.9) (209; 343)	94.9 (78.3 to 98.8) (187; 275)
Age, chronic conditions, province, specimen collection interval†	95.5 (80.8 to 98.9) (209; 343)	94.9 (78.2 to 98.8) (187; 275)
Age, chronic conditions, province, specimen collection interval, week of illness onset†	92.7 (68.6 to 98.3) (209; 343)	91.1 (61.5 to 98.0) (187; 275)
Variations applied to primary analysis period (weeks 45-48)
Excluding Ontario†‡	92.2 (66.5 to 98.2) (207; 312)	90.4 (57.9 to 97.8) (185; 253)
Restricted to only those with no chronic conditions†§	95.6 (66.8 to 99.4) (174; 263)	95.3 (63.7 to 99.4) (160; 227)
Including those with unknown chronic conditions as “no chronic condition”†‡	92.8 (69.4 to 98.3) (216; 370)	91.1 (61.5 to 97.9) (192; 297)
Including those with unknown chronic conditions as “with chronic condition”†‡	92.5 (67.9 to 98.2) (370; 216)	91 (61 to 97.9) (297; 192)
Age, chronic conditions, province, specimen collection interval, day of illness onset†	92.3 (67.3 to 98.2)	90.5 (58.8 to 97.8)
As above, restricted to only those with no chronic conditions†§	95.3 (64.3 to 99.4) (174; 263)	94.8 (60.2 to 99.3) (160; 227)
Pandemic H1N1 vaccine status unknown considered as “unvaccinated”†‡	93.1 (70.6 to 98.4) (214; 350)	91.6 (63.6 to 98.0) (191; 281)
As above, restricted to only those with no chronic conditions†§	95.6 (66.5 to 99.4) (175; 270)	95.2 (63.4 to 99.4) (161; 233)
Pandemic H1N1 vaccine status unknown considered as “vaccinated”†‡	75.9 (43.9 to 89.7) (350; 214)	75.6 (38.9 to 90.3) (281; 191)
As above, restricted to only those with no chronic conditions†§	92.0 (65.2 to 98.2) (270; 175)	91.4 (62.3 to 98.0) (233; 161)
Pandemic H1N1 vaccine interval <2 weeks considered vaccinated†‡	55.2 (19.8 to 75.0) (225; 376)	54.6 (14.8 to 75.9) (201; 300)
As above, restricted to only those with no chronic conditions†§	64.0 (26.0 to 82.5) (184; 285)	70.2 (34.4 to 86.4) (168; 246)
Pandemic H1N1 vaccine interval <2 weeks considered unvaccinated†‡	92.6 (68.5 to 98.3) (225; 376)	91.1 (61.3 to 97.9) (201; 300)
As above, restricted to only those with no chronic conditions†§	95.4 (64.7 to 99.4) (184; 285)	94.9 (60.9 to 99.3) (168; 246)
Age, chronic conditions, province, specimen collection interval, week of illness onset, receipt of 2008-9 seasonal vaccine†	88.0 (46.9 to 97.3) (187; 296)	85.2 (32.9 to 96.7) (167; 235)
As above, restricted to only those with no chronic conditions†§	92.3 (38.4 to 99.0) (158; 225)	91.8 (33.9 to 99.0) (144; 192)
Age, chronic conditions, province, specimen collection interval, week of illness onset, receipt of 2009-10 seasonal vaccine†	94.8 (60.5 to 99.3) (196; 321)	93.4 (48.2 to 99.2) (176; 256)
As above, restricted to only those with no chronic conditions†§	92.3 (39.1 to 99.0) (165; 246)	91.3 (30.4 to 98.9) (152; 210)
Restricted to only those with specimen collection interval ≤4 days†¶	90.9 (60.5 to 97.9) (190; 297)	88.8 (50.6 to 97.4) (171; 244)
Variations in analysis period (illness onset)**
Weeks 44-52 (1 November to 31 December 2009)†‡	78.4 (52.6 to 90.2) (411; 577)	75.1 (44.5 to 88.8) (372; 470)
Weeks 45-52 (8 November to 31 December 2009)†‡	86.7 (61.8 to 95.4) (217; 457)	84.1 (53.5 to 94.6) (194; 361)
Weeks 47-52 (22 November to 31 December 2009)†‡	92.5 (41.0 to 99.0) (36; 268)	91.7 (33.8 to 99.0) (29; 211)
Weeks 46-47 (15 November to 28 November 2009)†‡	92.6 (41.8 to 99.1) (65; 165)	92.4 (39.3 to 99.0) (58; 138)

*Vaccine effectiveness=(1−odds ratio)×100.

†Adjusted for age as 6 months to 9 years, 10-19 years, 20-49 years, and ≥50 years for overall and as 6 months to 9 years, 10-19 years, and 20-49 years for <50 years.

‡Adjusted for age, province, chronic conditions (yes/no), interval since influenza-like illness onset (≤4/>4 days), and week of illness onset.

§Adjusted for age, province, interval since influenza-like illness onset, and week of illness onset.

¶Adjusted for age, province, chronic conditions, and week of illness onset.

**During secondary analysis period (weeks 44-52), eight cases had received pandemic H1N1 vaccine >2 weeks before illness onset, including five children aged 1-9 years and three young adults aged 20-49 years; of these eight pandemic H1N1 vaccine failures, six cases reported no underlying conditions.

High estimates of vaccine protection, generally at least 90%, were robust and maintained across most sensitivity analyses. Altering the paediatric age categories selected for adjustment to include preschool children and younger and older school age children did not meaningfully alter estimates of vaccine effectiveness (available on request). The week (or date) of onset of illness was the only covariate that influenced estimates of vaccine effectiveness. As anticipated, an interval after immunisation was needed for optimal protection. If participants who had received vaccine within two weeks of onset of illness were returned to the analysis as vaccinated, estimates dropped considerably to 55% (20% to 75%). If those vaccinated within two weeks were instead considered to be unvaccinated, fully adjusted vaccine effectiveness was the same as in the primary analysis. Receipt of 2008-9 or 2009-10 seasonal vaccine had minimal influence on the effectiveness of pandemic H1N1 vaccine in multivariable analysis.

Fully adjusted estimates of vaccine effectiveness were lower (78%, 53% to 90%) during the secondary analysis period spanning weeks 44-52. We had anticipated this, given that roll-out of vaccine had begun only one week earlier and a larger number of controls without opportunity to receive vaccine were included in week 44 (figure). Estimates of vaccine effectiveness increased during the secondary analysis period when restriction started instead at week 45 (87%, 62% to 95%) and were again comparable to the primary analysis period with later restriction or for weeks 46-47.

Discussion

Using the sentinel physician surveillance system in Canada, we measured excellent protection conferred by a single dose of the monovalent AS03 adjuvanted pandemic vaccine during the autumn 2009 epidemic in Canada. Specifically, 14 days or more after vaccination, we estimated vaccine effectiveness of 93% (95% confidence interval 69% to 98%) against medically attended, laboratory confirmed pandemic influenza A/H1N1 illness. This estimate was robust and maintained (≥90%) across most sensitivity analyses and primarily reflects protection conferred to children and young adults.

Comparison with other studies

Our estimates of protection by vaccine are consistent with immunogenicity studies indicating very high antibody response to AS03 adjuvanted pandemic H1N1 vaccine across age groups,1 3 4 5 as well as with the protection that would be expected given excellent match of vaccine to circulating virus. The findings are also consistent with recent estimates of vaccine effectiveness derived in a smaller test negative case-control study among children under 10 years of age in New Brunswick, Canada (28 cases (none vaccinated); 63 controls (24 vaccinated)) given a single dose of the same product (100%, 79.5% to 100%).24 Our results are also consistent with study findings based on the screening method in Germany among patients aged 14 years and over given the AS03 adjuvanted pandemic H1N1 vaccine manufactured by GlaxoSmithKline in Dresden.25 In that study, vaccine effectiveness among participants aged 14-59 years was 96.8% (95.2% to 97.9%) and slightly lower in those aged 60 years or over (83.3%, 71.0% to 90.5%).25 A retrospective cohort study from Scotland across all age groups similarly reported protection by vaccine of 95% (76% to 100%), but the proportionate mix and type(s) of vaccine used were not specified.26 Our estimates are higher than those based on the test negative case-control design applied to a linked monitoring network across seven countries of Europe, in which participants received a mix of adjuvanted and non-adjuvanted formulations; additional methodological differences may also explain their lower estimate of vaccine effectiveness of 71.9% (45.6% to 85.5%).27 As with all observational designs, the relative strengths and weaknesses, and potential for bias and confounding, have to be taken into account in interpreting each of these datasets. In particular, distribution of pandemic vaccine was progressing as the autumn H1N1 epidemic was evolving in many countries. Consideration of detail related to the change in immunisation coverage among controls over the course of the analysis period is essential for each of these studies.

Strengths and limitations of study

Strengths of our study include the almost sole use of a single vaccine formulation—thus simplifying interpretation—and a well established system for monitoring of vaccine effectiveness that has been rehearsed across several seasons in Canada (since 2004).8 9 10 11 In general, adjusted point estimates of the effectiveness of (non-adjuvanted) influenza vaccine against seasonal strains based on this sentinel surveillance system in Canada have ranged between 50% and 60% overall.8 9 10 11 Estimates from the sentinel system have been comparable to available results from randomised controlled trials in the United States using the Canadian GlaxoSmithKline vaccine during the corresponding season (2005-6 and 2006-7).28 Estimates of vaccine effectiveness have also been well correlated in component specific analyses with the relative match/mismatch of vaccine antigens to circulating strains. With a good match, such as between the A/H1N1 component of the 2006-7 (non-adjuvanted) vaccine and the then circulating virus (A/NewCaledonia/20/99(H1N1)-like), vaccine effectiveness was also found to exceed 90% when measured by this system.10 A further advantage of the sentinel system is its breadth of representation, including more than 500 sentinel sites spanning four provinces. Such geographical breadth becomes a particular strength in capturing variation in circulating viruses and when pursuing the rare event of vaccine failure in the context of highly immunogenic vaccine. In our analysis, adjustment by week of onset of illness and exploration over varying time periods in sensitivity analyses made the effect of co-evolving epidemic activity and vaccine roll-out explicit.

Limitations of the sentinel system for monitoring vaccine effectiveness have been described previously.8 9 10 11 In particular, despite study protocols, standardised questionnaires, instruction kits, and ethics review, the sentinel system remains a public health surveillance approach so that monitoring of vaccine effectiveness is not as rigorous as in controlled clinical trials. The test negative design superimposed on this system is an observational case-control method, and the same epidemiological considerations as with any case-control study still apply. This approach cannot guard against the systematic influences of bias (selection, information) or unmeasured confounders. We carefully assessed participants’ profiles against historical and expected demographic information as a flag for possible evidence of selection bias. Despite reassuring profiles, however, this still cannot be fully ruled out. We required participants to have presented to a physician with influenza-like illness, thus standardising in part, but not fully, for healthcare seeking behaviour, access to healthcare, and severity of illness. However, clinicians’ discretion in the decision to test is recognised.

Although this was not a blinded clinical trial, we collected information on vaccine before the physician or patient knew the influenza test result, thus helping to reduce recall bias. We have interpreted results as reflecting the AS03 adjuvanted vaccine most used in Canada on the basis of relative distribution and limited access to the unadjuvanted formulation, but most vaccinated participants did not know or report the type of vaccine they received. We collected information on covariates known to influence estimates of vaccine effectiveness (age, chronic conditions, timeliness of specimen collection) and adjusted for recognised confounders tested over several years of application of this system in Canada. Some information, such as on chronic conditions, is dichotomised in a yes/no format without further detail provided. Although this may not represent finer differential across specific conditions, little effect of residual confounding has been attributed to aggregation of comorbidity in studies of influenza vaccination.29 Ultimately, however, residual confounding cannot be ruled out.

Canada delayed the administration of the 2009-10 seasonal influenza vaccine until pandemic vaccine became available. This prevented us from assessing its previous administration in response to pandemic H1N1 vaccine. Finally, despite a broad surveillance network, the number of vaccine failures identified in this study was small, a limitation difficult to overcome in the context of highly immunogenic vaccine. This precluded stratified analysis (such as age specific estimates of vaccine effectiveness) and may potentially limit the meaningfulness of extensive multivariable adjustment or sensitivity analysis. Given that more than 80% of our participants were under 50 years of age, our estimates of protection by vaccine cannot be reliably interpreted for older adults. Further evidence for effectiveness in older people is needed.

Conclusions

We report estimates of vaccine effectiveness suggesting very high protection conferred by a single dose of the monovalent AS03 adjuvanted pandemic vaccine most used in Canada during autumn 2009, with reference in particular to children and young adults. Although limited by a small number of vaccine failures, we interpret these findings to be consistent with indicators of immunogenicity showing very high vaccine induced antibody response and with virological characterisation suggesting an excellent match of vaccine to circulating virus. Our findings are relevant to the evaluation of pandemic vaccination efforts not only in Canada but also in other countries where adjuvanted vaccines were used. Our results may help to inform the further development of influenza vaccine options.

Immunogenicity trials of AS03 adjuvanted pandemic H1N1 vaccines showed substantial vaccine induced antibody response after a single dose

Interpretation of immunogenicity studies is limited by serological surrogates for protection, small sample sizes, and uncertain relevance if circulating viruses include an unrecognised mix of antigenic variants

The effectiveness of the monovalent AS03 adjuvanted pandemic vaccine exceeded 90% against medically attended, laboratory confirmed pandemic H1N1 illness during autumn 2009 in Canada

The results apply particularly to children and young adults

Although limited by a small number of vaccine failures, results are consistent with the protection expected given very high vaccine induced antibody response and excellent match to circulating virus