Literature DB >> 21292158

Single-molecule studies of RNA polymerase: one singular sensation, every little step it takes.

Matthew H Larson1, Robert Landick, Steven M Block.   

Abstract

Transcription is the first of many biochemical steps that turn the genetic information found in DNA into the proteins responsible for driving cellular processes. In this review, we highlight certain advantages of single-molecule techniques in the study of prokaryotic and eukaryotic transcription, and the specific ways in which these techniques complement conventional, ensemble-based biochemistry. We focus on recent literature, highlighting examples where single-molecule methods have provided fresh insights into mechanism. We also present recent technological advances and outline future directions in the field.
Copyright © 2011 Elsevier Inc. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21292158      PMCID: PMC3056354          DOI: 10.1016/j.molcel.2011.01.008

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  97 in total

1.  Forward translocation is the natural pathway of RNA release at an intrinsic terminator.

Authors:  Thomas J Santangelo; Jeffrey W Roberts
Journal:  Mol Cell       Date:  2004-04-09       Impact factor: 17.970

2.  Transcription on nucleosomal templates by RNA polymerase II in vitro: inhibition of elongation with enhancement of sequence-specific pausing.

Authors:  M G Izban; D S Luse
Journal:  Genes Dev       Date:  1991-04       Impact factor: 11.361

Review 3.  The molecular heterogeneity of protein kinase C and its implications for cellular regulation.

Authors:  Y Nishizuka
Journal:  Nature       Date:  1988-08-25       Impact factor: 49.962

4.  Role of deoxyribonucleic acid-ribonucleic acid hybrids in eukaryotes. Study of the template requirements of yeast ribonucleic acid polymerases and nature of the ribonucleic acid product.

Authors:  S Dezélée; A Sentenac; P Fromageot
Journal:  J Biol Chem       Date:  1974-09-25       Impact factor: 5.157

5.  Extensive homology among the largest subunits of eukaryotic and prokaryotic RNA polymerases.

Authors:  L A Allison; M Moyle; M Shales; C J Ingles
Journal:  Cell       Date:  1985-09       Impact factor: 41.582

6.  Studies of in vitro transcription by calf thymus RNA polymerase II using a novel duplex DNA template.

Authors:  T R Kadesch; M J Chamberlin
Journal:  J Biol Chem       Date:  1982-05-10       Impact factor: 5.157

7.  Prokaryotic and eukaryotic RNA polymerases have homologous core subunits.

Authors:  D Sweetser; M Nonet; R A Young
Journal:  Proc Natl Acad Sci U S A       Date:  1987-03       Impact factor: 11.205

8.  Molecular heterogeneity of calcium channel beta-subunits in canine and human heart: evidence for differential subcellular localization.

Authors:  Jason D Foell; Ravi C Balijepalli; Brian P Delisle; Anne Marie R Yunker; Seth L Robia; Jeffrey W Walker; Maureen W McEnery; Craig T January; Timothy J Kamp
Journal:  Physiol Genomics       Date:  2004-04-13       Impact factor: 3.107

9.  Rho-independent termination: dyad symmetry in DNA causes RNA polymerase to pause during transcription in vitro.

Authors:  P J Farnham; T Platt
Journal:  Nucleic Acids Res       Date:  1981-02-11       Impact factor: 16.971

10.  Vesicle encapsulation studies reveal that single molecule ribozyme heterogeneities are intrinsic.

Authors:  Burak Okumus; Timothy J Wilson; David M J Lilley; Taekjip Ha
Journal:  Biophys J       Date:  2004-10       Impact factor: 4.033

View more
  38 in total

1.  Optical tweezers study life under tension.

Authors:  Furqan M Fazal; Steven M Block
Journal:  Nat Photonics       Date:  2011-05-31       Impact factor: 38.771

Review 2.  Photophysics of fluorescent probes for single-molecule biophysics and super-resolution imaging.

Authors:  Taekjip Ha; Philip Tinnefeld
Journal:  Annu Rev Phys Chem       Date:  2012-01-30       Impact factor: 12.703

3.  Efficient reconstitution of transcription elongation complexes for single-molecule studies of eukaryotic RNA polymerase II.

Authors:  Murali Palangat; Matthew H Larson; Xiaopeng Hu; Averell Gnatt; Steven M Block; Robert Landick
Journal:  Transcription       Date:  2012 May-Jun

4.  High Spatiotemporal-Resolution Magnetic Tweezers: Calibration and Applications for DNA Dynamics.

Authors:  David Dulin; Tao Ju Cui; Jelmer Cnossen; Margreet W Docter; Jan Lipfert; Nynke H Dekker
Journal:  Biophys J       Date:  2015-11-17       Impact factor: 4.033

5.  Conformational plasticity of the essential membrane-associated mannosyltransferase PimA from mycobacteria.

Authors:  David Giganti; Jorge Alegre-Cebollada; Saioa Urresti; David Albesa-Jové; Ane Rodrigo-Unzueta; Natalia Comino; Michael Kachala; Sonia López-Fernández; Dmitri I Svergun; Julio M Fernández; Marcelo E Guerin
Journal:  J Biol Chem       Date:  2013-08-20       Impact factor: 5.157

Review 6.  High-throughput single-molecule studies of protein-DNA interactions.

Authors:  Aaron D Robison; Ilya J Finkelstein
Journal:  FEBS Lett       Date:  2014-05-21       Impact factor: 4.124

7.  Control of transcriptional pausing by biased thermal fluctuations on repetitive genomic sequences.

Authors:  Masahiko Imashimizu; Ariel Afek; Hiroki Takahashi; Lucyna Lubkowska; David B Lukatsky
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-08       Impact factor: 11.205

Review 8.  How to switch the motor on: RNA polymerase initiation steps at the single-molecule level.

Authors:  M Marchetti; A Malinowska; I Heller; G J L Wuite
Journal:  Protein Sci       Date:  2017-05-12       Impact factor: 6.725

Review 9.  Bacterial replication, transcription and translation: mechanistic insights from single-molecule biochemical studies.

Authors:  Andrew Robinson; Antoine M van Oijen
Journal:  Nat Rev Microbiol       Date:  2013-04-03       Impact factor: 60.633

10.  X-ray crystal structure of Escherichia coli RNA polymerase σ70 holoenzyme.

Authors:  Katsuhiko S Murakami
Journal:  J Biol Chem       Date:  2013-02-06       Impact factor: 5.157

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.