Literature DB >> 21290551

Systematic screening for catalytic promiscuity in 4-oxalocrotonate tautomerase: enamine formation and aldolase activity.

Ellen Zandvoort1, Bert-Jan Baas, Wim J Quax, Gerrit J Poelarends.   

Abstract

The enzyme 4-oxalocrotonate tautomerase (4-OT) is part of a catabolic pathway for aromatic hydrocarbons in Pseudomonas putida mt-2, where it catalyzes the conversion of 2-hydroxy-2,4-hexadienedioate(1) to 2-oxo-3-hexenedioate(2). 4-OT is a member of the tautomerase superfamily, a group of homologous proteins that are characterized by a β-α-β structural fold and a catalytic amino-terminal proline. In the mechanism of 4-OT, Pro1 is a general base that abstracts the 2-hydroxyl proton of 1 for delivery to the C-5 position to yield 2. Here, 4-OT was explored for nucleophilic catalysis based on the mechanistic reasoning that its Pro1 residue has the correct protonation state (pK(a) ∼6.4) to be able to act as a nucleophile at pH 7.3. By using inhibition studies and mass spectrometry experiments it was first demonstrated that 4-OT can use Pro1 as a nucleophile to form an imine/enamine with various aldehyde and ketone compounds. The chemical potential of the smallest enamine (generated from acetaldehyde) was then explored for further reactions by using a small set of selected electrophiles. This systematic screening approach led to the discovery of a new promiscuous activity in wild-type 4-OT: the enzyme catalyzes the aldol condensation of acetaldehyde with benzaldehyde to form cinnamaldehyde. This low-level aldolase activity can be improved 16-fold with a single point mutation (L8R) in 4-OT's active site. The proposed mechanism of the reaction mimicks that used by natural class-I aldolases and designed catalytic aldolase antibodies. An important difference, however, is that these natural and designed aldolases use the primary amine of a lysine residue to form enamines with carbonyl substrates, whereas 4-OT uses the secondary amine of an active-site proline as the nucleophile catalyst. Further systematic screening of 4-OT and related proline-based biocatalysts might prove to be a useful approach to discover new promiscuous carbonyl transformation activities that could be exploited to develop new biocatalysts for carbon-carbon bond formation.
Copyright © 2011 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

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Year:  2011        PMID: 21290551     DOI: 10.1002/cbic.201000633

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  14 in total

1.  Kinetic and Structural Analysis of Two Linkers in the Tautomerase Superfamily: Analysis and Implications.

Authors:  Bert-Jan Baas; Brenda P Medellin; Jake A LeVieux; Kaci Erwin; Emily B Lancaster; William H Johnson; Tamer S Kaoud; R Yvette Moreno; Marieke de Ruijter; Patricia C Babbitt; Yan Jessie Zhang; Christian P Whitman
Journal:  Biochemistry       Date:  2021-05-21       Impact factor: 3.162

2.  Kinetic and structural characterization of a cis-3-Chloroacrylic acid dehalogenase homologue in Pseudomonas sp. UW4: A potential step between subgroups in the tautomerase superfamily.

Authors:  Jake A LeVieux; Bert-Jan Baas; Tamer S Kaoud; Rebecca Davidson; Patricia C Babbitt; Yan Jessie Zhang; Christian P Whitman
Journal:  Arch Biochem Biophys       Date:  2017-10-27       Impact factor: 4.013

Review 3.  Rational approaches for engineering novel functionalities in carbon-carbon bond forming enzymes.

Authors:  Perrin Baker; Stephen Y K Seah
Journal:  Comput Struct Biotechnol J       Date:  2012-10-02       Impact factor: 7.271

Review 4.  Computational tools for rational protein engineering of aldolases.

Authors:  Michael Widmann; Jürgen Pleiss; Anne K Samland
Journal:  Comput Struct Biotechnol J       Date:  2012-11-13       Impact factor: 7.271

5.  Engineering a Promiscuous Tautomerase into a More Efficient Aldolase for Self-Condensations of Linear Aliphatic Aldehydes.

Authors:  Mehran Rahimi; Jan-Ytzen van der Meer; Edzard M Geertsema; Gerrit J Poelarends
Journal:  Chembiochem       Date:  2017-05-30       Impact factor: 3.164

6.  Enantiocomplementary Epoxidation Reactions Catalyzed by an Engineered Cofactor-Independent Non-natural Peroxygenase.

Authors:  Guangcai Xu; Michele Crotti; Thangavelu Saravanan; Kim M Kataja; Gerrit J Poelarends
Journal:  Angew Chem Int Ed Engl       Date:  2020-04-14       Impact factor: 15.336

7.  Demethionylation of Pro-1 variants of 4-oxalocrotonate tautomerase in Escherichia coli by co-expression with an engineered methionine aminopeptidase.

Authors:  Bert-Jan Baas; Ellen Zandvoort; Anna A Wasiel; Gerrit J Poelarends
Journal:  FEBS Open Bio       Date:  2014-07-09       Impact factor: 2.693

8.  Using mutability landscapes of a promiscuous tautomerase to guide the engineering of enantioselective Michaelases.

Authors:  Jan-Ytzen van der Meer; Harshwardhan Poddar; Bert-Jan Baas; Yufeng Miao; Mehran Rahimi; Andreas Kunzendorf; Ronald van Merkerk; Pieter G Tepper; Edzard M Geertsema; Andy-Mark W H Thunnissen; Wim J Quax; Gerrit J Poelarends
Journal:  Nat Commun       Date:  2016-03-08       Impact factor: 14.919

9.  In Situ Acetaldehyde Synthesis for Carboligation Reactions.

Authors:  Lieuwe Biewenga; Andreas Kunzendorf; Gerrit J Poelarends
Journal:  Chembiochem       Date:  2020-02-12       Impact factor: 3.164

10.  Tuning Enzyme Activity for Nonaqueous Solvents: Engineering an Enantioselective "Michaelase" for Catalysis in High Concentrations of Ethanol.

Authors:  Chao Guo; Lieuwe Biewenga; Max Lubberink; Ronald van Merkerk; Gerrit J Poelarends
Journal:  Chembiochem       Date:  2020-02-18       Impact factor: 3.164

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