Literature DB >> 21289652

Global distribution patterns of distinct clades of the photosynthetic picoeukaryote Ostreococcus.

Elif Demir-Hilton1, Sebastian Sudek, Marie L Cuvelier, Chelle L Gentemann, Jonathan P Zehr, Alexandra Z Worden.   

Abstract

Ostreococcus is a marine picophytoeukaryote for which culture studies indicate there are 'high-light' and 'low-light' adapted ecotypes. Representatives of these ecotypes fall within two to three 18S ribosomal DNA (rDNA) clades for the former and one for the latter. However, clade distributions and relationships to this form of niche partitioning are unknown in nature. We developed two quantitative PCR primer-probe sets and enumerated the proposed ecotypes in the Pacific Ocean as well as the subtropical and tropical North Atlantic. Statistical differences in factors such as salinity, temperature and NO(3) indicated the ecophysiological parameters behind clade distributions are more complex than irradiance alone. Clade OII, containing the putatively low-light adapted strains, was detected at warm oligotrophic sites. In contrast, Clade OI, containing high-light adapted strains, was present in cooler mesotrophic and coastal waters. Maximal OI abundance (19 555±37 18S rDNA copies per ml) was detected in mesotrophic waters at 40 m depth, approaching the nutricline. OII was often more abundant at the deep chlorophyll maximum, when nutrient concentrations were significantly higher than at the surface (stratified euphotic zone waters). However, in mixed euphotic-zone water columns, relatively high numbers (for example, 891±107 18S rDNA copies per ml, Sargasso Sea, springtime) were detected at the surface. Both Clades OI and OII were found at multiple euphotic zone depths, but co-occurrence at the same geographical location appeared rare and was detected only in continental slope waters. In situ growth rate estimates using these primer-probes and better comprehension of physiology will enhance ecological understanding of Ostreococcus Clades OII and OI which appear to be oceanic and coastal clades, respectively.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21289652      PMCID: PMC3146286          DOI: 10.1038/ismej.2010.209

Source DB:  PubMed          Journal:  ISME J        ISSN: 1751-7362            Impact factor:   10.302


  26 in total

1.  Study of genetic diversity of eukaryotic picoplankton in different oceanic regions by small-subunit rRNA gene cloning and sequencing.

Authors:  B Díez; C Pedrós-Alió; R Massana
Journal:  Appl Environ Microbiol       Date:  2001-07       Impact factor: 4.792

2.  Ecotype diversity in the marine picoeukaryote Ostreococcus (Chlorophyta, Prasinophyceae).

Authors:  Francisco Rodríguez; Evelyne Derelle; Laure Guillou; Florence Le Gall; Daniel Vaulot; Hervé Moreau
Journal:  Environ Microbiol       Date:  2005-06       Impact factor: 5.491

3.  Mapping of picoeucaryotes in marine ecosystems with quantitative PCR of the 18S rRNA gene.

Authors:  Fei Zhu; Ramon Massana; Fabrice Not; Dominique Marie; Daniel Vaulot
Journal:  FEMS Microbiol Ecol       Date:  2004-12-22       Impact factor: 4.194

4.  Niche partitioning among Prochlorococcus ecotypes along ocean-scale environmental gradients.

Authors:  Zackary I Johnson; Erik R Zinser; Allison Coe; Nathan P McNulty; E Malcolm S Woodward; Sallie W Chisholm
Journal:  Science       Date:  2006-03-24       Impact factor: 47.728

5.  Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes.

Authors:  L R Moore; G Rocap; S W Chisholm
Journal:  Nature       Date:  1998-06-04       Impact factor: 49.962

6.  Phylogenetic diversity of ultraplankton plastid small-subunit rRNA genes recovered in environmental nucleic acid samples from the Pacific and Atlantic coasts of the United States.

Authors:  M S Rappé; M T Suzuki; K L Vergin; S J Giovannoni
Journal:  Appl Environ Microbiol       Date:  1998-01       Impact factor: 4.792

7.  Significant CO2 fixation by small prymnesiophytes in the subtropical and tropical northeast Atlantic Ocean.

Authors:  Ludwig Jardillier; Mikhail V Zubkov; John Pearman; David J Scanlan
Journal:  ISME J       Date:  2010-04-15       Impact factor: 10.302

8.  Abundance and distribution of Ostreococcus sp. in the San Pedro Channel, California, as revealed by quantitative PCR.

Authors:  Peter D Countway; David A Caron
Journal:  Appl Environ Microbiol       Date:  2006-04       Impact factor: 4.792

9.  Quantitative analysis of nifH genes and transcripts from aquatic environments.

Authors:  Steven M Short; Jonathan P Zehr
Journal:  Methods Enzymol       Date:  2005       Impact factor: 1.600

10.  Diversity of picoplanktonic prasinophytes assessed by direct nuclear SSU rDNA sequencing of environmental samples and novel isolates retrieved from oceanic and coastal marine ecosystems.

Authors:  Laure Guillou; Wenche Eikrem; Marie-Josèphe Chrétiennot-Dinet; Florence Le Gall; Ramon Massana; Khadidja Romari; Carlos Pedrós-Alió; Daniel Vaulot
Journal:  Protist       Date:  2004-06
View more
  46 in total

1.  Phytoplankton distribution patterns in the northwestern Sargasso Sea revealed by small subunit rRNA genes from plastids.

Authors:  Alexander H Treusch; Elif Demir-Hilton; Kevin L Vergin; Alexandra Z Worden; Craig A Carlson; Michael G Donatz; Robert M Burton; Stephen J Giovannoni
Journal:  ISME J       Date:  2011-09-29       Impact factor: 10.302

2.  Central role for ferritin in the day/night regulation of iron homeostasis in marine phytoplankton.

Authors:  Hugo Botebol; Emmanuel Lesuisse; Robert Šuták; Christophe Six; Jean-Claude Lozano; Philippe Schatt; Valérie Vergé; Amos Kirilovsky; Joe Morrissey; Thibaut Léger; Jean-Michel Camadro; Audrey Gueneugues; Chris Bowler; Stéphane Blain; François-Yves Bouget
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-09       Impact factor: 11.205

3.  Monthly to interannual variability of microbial eukaryote assemblages at four depths in the eastern North Pacific.

Authors:  Diane Y Kim; Peter D Countway; Adriane C Jones; Astrid Schnetzer; Warren Yamashita; Christine Tung; David A Caron
Journal:  ISME J       Date:  2013-10-31       Impact factor: 10.302

4.  Marine algae and land plants share conserved phytochrome signaling systems.

Authors:  Deqiang Duanmu; Charles Bachy; Sebastian Sudek; Chee-Hong Wong; Valeria Jiménez; Nathan C Rockwell; Shelley S Martin; Chew Yee Ngan; Emily N Reistetter; Marijke J van Baren; Dana C Price; Chia-Lin Wei; Adrian Reyes-Prieto; J Clark Lagarias; Alexandra Z Worden
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-29       Impact factor: 11.205

5.  Light-driven synchrony of Prochlorococcus growth and mortality in the subtropical Pacific gyre.

Authors:  Francois Ribalet; Jarred Swalwell; Sophie Clayton; Valeria Jiménez; Sebastian Sudek; Yajuan Lin; Zackary I Johnson; Alexandra Z Worden; E Virginia Armbrust
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-15       Impact factor: 11.205

6.  Microbial community transcriptional networks are conserved in three domains at ocean basin scales.

Authors:  Frank O Aylward; John M Eppley; Jason M Smith; Francisco P Chavez; Christopher A Scholin; Edward F DeLong
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-09       Impact factor: 11.205

7.  Pattern and synchrony of gene expression among sympatric marine microbial populations.

Authors:  Elizabeth A Ottesen; Curtis R Young; John M Eppley; John P Ryan; Francisco P Chavez; Christopher A Scholin; Edward F DeLong
Journal:  Proc Natl Acad Sci U S A       Date:  2013-01-23       Impact factor: 11.205

8.  Diversity of Viruses Infecting the Green Microalga Ostreococcus lucimarinus.

Authors:  Evelyne Derelle; Adam Monier; Richard Cooke; Alexandra Z Worden; Nigel H Grimsley; Hervé Moreau
Journal:  J Virol       Date:  2015-03-18       Impact factor: 5.103

9.  Abundance and Biogeography of Picoprasinophyte Ecotypes and Other Phytoplankton in the Eastern North Pacific Ocean.

Authors:  Melinda P Simmons; Sebastian Sudek; Adam Monier; Alexander J Limardo; Valeria Jimenez; Christopher R Perle; Virginia A Elrod; J Timothy Pennington; Alexandra Z Worden
Journal:  Appl Environ Microbiol       Date:  2016-01-04       Impact factor: 4.792

10.  A global perspective on marine photosynthetic picoeukaryote community structure.

Authors:  Amy R Kirkham; Cécile Lepère; Ludwig E Jardillier; Fabrice Not; Heather Bouman; Andrew Mead; David J Scanlan
Journal:  ISME J       Date:  2013-01-31       Impact factor: 10.302

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.