| Literature DB >> 21283575 |
Abstract
Human scabies is a major global public health issue, with an estimated 300 million cases per year worldwide. Prevalence rates are particularly high in many third-world regions and within various indigenous communities in developed countries. Infestation with Sarcoptes Scabiei is associated with group-A streptococcal pyoderma which in turn predisposes to rheumatic fever, acute glomerulonephritis and their respective long-term sequelae: rheumatic heart disease and chronic renal insufficiency. The documented difficulties inherent in achieving scabies control within affected communities have motivated us to develop a network-dependent Monte-Carlo model of the scabies contagion, with the dual aims of gaining insight into its dynamics, and in determining the effects of various treatment strategies. Here we show that scabies burden is adversely affected by increases in average network degree, prominent network clustering, and by a person-to-person transmissibility of greater magnitude. We demonstrate that creating a community-specific model allows for the determination of an effective treatment protocol that can satisfy any pre-defined target prevalence. We find frequent low-density treatment protocols are inherently advantageous in comparison with infrequent mass screening and treatment regimes: prevalence rates are lower when compared with protocols that administer the same number of treatments over a given time interval less frequently, and frequent low-density treatment protocols have economic, practical and public acceptance advantages that may facilitate their long-term implementation. This work demonstrates the importance of stochasticity, community structure and the heterogeneity of individuals in influencing the dynamics of the human scabies contagion, and provides a practical method for investigating the outcomes of various intervention strategies.Entities:
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Year: 2011 PMID: 21283575 PMCID: PMC3026796 DOI: 10.1371/journal.pone.0015990
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1Network structure and connectivity matrix.
In (a), a typical example of the 200-vertex network architecture used to model community structure is shown. In (b) we represent the connectivity between the first 80 vertices of this network as a connectivity matrix, where grey squares represent connections between pairs of vertices. Note the clustering (represented as higher connectivity along the main diagonal), the symmetry (the non-directed nature of the interaction between vertices) and its overall sparseness (most pairs of vertices remain unconnected).
Figure 2Examples of small-world network architectures.
In (a), we represent the expected community structure with a non-directed graph of 200 vertices that is clustered and exhibits a small number of vertices with multiple connections. The average degree is ∼6, indicating individuals are in close contact with an average of 6 people. In (b), we decrease the average degree to ∼4 while maintaining the architectural features of (a). In (c), the highly connected vertices are absent hence all individuals are regularly connected. In (d) and (e) all local clustering is lost: (d) is representative – given the constraint of a relatively small network size – of a scale-free structure, while (e) is a regular random graph. Note that we have constructed (c), (d) and (e) such that the average degree is the same as (a). Each class of graph is generated randomly and determined by the values of three adjustable parameters (see text).
Figure 3The updating rules.
The decision algorithm determining whether a non-affected individual within the community acquires scabies or whether an affected person is treated is shown in schematic form. The probability of developing scabies depends on the number of first-degree contacts that are positive (governed by the relation shown at top left), the individuals' age (top centre relation) and their genetic susceptibility (top right relation), in addition to Q, the community-wide acquisition probability, and J, the probability of acquiring scabies from person(s) external to the community. Treatment probabilities (Rx) are defined in terms of density and frequency.
Figure 4Scabies prevalence.
Here we show daily prevalence rates for scenario 2 over a 36-month period (a). Beginning with arbitrary scabies prevalence rates of 0.04 and 0.54, note all relaxation times are ∼300 days. Both simulations thus converge and remain at steady-state with stochastic fluctuations. In (b), we track the evolution of a single run of scenario 2 daily and at equilibrium over 5 years, with a magnified prevalence scale to highlight the fluctuations. However, despite the fluctuations, note the time series is stationary; for example, the mean and variance of these data for years 2 and 5 are 0.53 and 0.51, and 4.4×10−4 and 3.6×10−4 respectively.
Scenario 1 – treatment regime based on treating one index case and all first degree contacts every seven days (Q = 10−1.5).
| Network size | Network structure | |||||||
| BL | 100 | 500 | 1000 | A | B | C | D | |
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| 6.1, 1.4 | 6.1, 0.5 | 5.8, 0.3 | 4.6, 1.0 | 6.2, 0.7 | 6.1, 1.9 | 5.9, 0.7 |
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| 22.8, 38.4 | 20.3, 36.9 | 21.4, 23.0 | 25.9, 48.0 | 12, 7.9 | 48, 79.8 | 13.0, 2.9 |
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| 0.06, 0.01 | 0.01, 0.00 | 0.01, 0.00 | 0.02, 0.01 | 0.03, 0.00 | 0.03, 0.01 | 0.03, 0.00 |
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| 0.30, 0.12 | 0.50, 0.12 | 0.53, 0.06 | 0.20, 0.11 | 0.68, 0.10 | 0.04, 0.03 | 0.03, 0.02 |
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| 0.06, 0.01 | 0.01, 0.00 | 0.01, 0.00 | 0.02, 0.01 | 0.03, 0.01 | 0.03, 0.01 | 0.03, 0.01 |
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| 0.14, 0.11 | 0.16, 0.03 | 0.18, 0.03 | 0.09*, 0.09 | 0.18, 0.08 | 0.09*, 0.06 | 0.11*, 0.06 |
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| 0.27, 0.24 | 0.27, 0.09 | 0.30, 0.07 | 0.16*, 0.16 | 0.29, 0.17 | 0.16*, 0.13 | 0.20*, 0.07 |
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| 37.4, 17.3 | 35.1, 6.0 | 33.4, 0.4 | 30.2, 8.6 | 34.5, 7.2 | 36.1, 6.7 | 38.3, 6.0 |
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| 68.2, 58.1 | 58.7, 21.7 | 58.1, 1.5 | 54.7, 19.2 | 58.5, 22.6 | 62.5, 18.6 | 68.3, 19.2 |
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| 37.5, 15.4 | 35.0, 3.5 | 33.9, 0.3 | 31.9, 5.5 | 34.4, 4.3 | 37.4, 5.2 | 38.1, 5.5 |
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| 68.3, 59.8 | 59.5, 19.5 | 57.8, 1.2 | 56.3, 16.4 | 60.3, 21.2 | 66.1, 16.9 | 67.5, 29.1 |
Results of simulating our model at equilibrium as a function of varying network size and structure. All results are given as the means and three standard deviations of 24 individual one-year simulations at equilibrium. Each simulation is based on a randomly generated network of the given architecture. For prevalence rates only, results denoted by an asterix indicate mean values significantly different from the mean values given in the baseline column. (Student's t-test with significance accepted if p<0.001).
BL: Baseline network (Boldface, N = 200, clustered, broad degree distribution).
A: N = 200; clustered, broad degree distribution, low degree.
B: N = 200; clustered, regular.
C: N = 200; Non-clustered, approximately scale free.
D: N = 200; Non-clustered, regular.
Expected CC: The clustering coefficient of a randomly generated graph with the same connectivity.
**Incidence rates per 100 person years.
***Effective treatments per 100 person years.
Scenario 2 – treatment regime based on treating three index cases, without treating any first-degree contacts, every seven days (Q = 5×10−1.5).
| Network size | Network structure | |||||||
| BL | 100 | 500 | 1000 | A | B | C | D | |
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| 5.9, 1.6 | 6.0, 0.5 | 5.9, 0.3 | 4.6, 1.2 | 6.2, 0.7 | 6.1, 2.2 | 5.8, 0.6 |
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| 18.8, 15.4 | 21.4, 40.1 | 20.5, 16.4 | 22.8, 58.6 | 12.8, 17.2 | 42.4, 80.4 | 13.0, 3.7 |
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| 0.06, 0.02 | 0.01, 0.00 | 0.01, 0.00 | 0.02, 0.01 | 0.03, 0.00 | 0.03, 0.01 | 0.03, 0.00 |
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| 0.30, 0.13 | 0.50, 0.12 | 0.53, 0.04 | 0.20, 0.11 | 0.68, 0.13 | 0.04, 0.03 | 0.03, 0.01 |
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| 0.05, 0.01 | 0.01, 0.00 | 0.01, 0.00 | 0.02, 0.01 | 0.03, 0.01 | 0.03, 0.01 | 0.03, 0.01 |
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| 0.48, 0.17 | 0.50, 0.06 | 0.51, 0.04 | 0.37*, 0.14 | 0.50, 0.10 | 0.45, 0.14 | 0.46, 0.10 |
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| 0.66, 0.24 | 0.68, 0.07 | 0.69, 0.06 | 0.56*, 0.17 | 0.70, 0.16 | 0.61*, 0.16 | 0.64, 0.13 |
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| 76.0, 19.4 | 79.2, 8.6 | 75.2, 6.8 | 77.5, 6.8 | 76.8, 6.2 | 77.8, 5.3 | 77.6, 5.9 |
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| 104, 46.9 | 109, 27.2 | 103, 13.8 | 116, 22.3 | 100, 22.6 | 106, 13.8 | 109, 18.6 |
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| 77.4, 2.1 | 77.4, 1.1 | 75.9, 0.5 | 75.9, 1.0 | 75.6, 0.9 | 76.0, 1.0 | 76.0, 0.7 |
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| 110, 50.4 | 108, 24.0 | 104, 12.9 | 114, 20.1 | 105, 22.6 | 103, 20.0 | 108, 24.1 |
Results of simulating our model at equilibrium as a function of varying network size and structure. All results are given as the means and three standard deviations of 24 individual one-year simulations at equilibrium. Each simulation is based on a randomly generated network of the given architecture. For prevalence rates only, results denoted by an asterix indicate mean values significantly different from the mean values given in the baseline column. (Student's t-test with significance accepted if p<0.001).
BL: Baseline network (Boldface, N = 200, clustered, broad degree distribution).
A: N = 200; clustered, broad degree distribution, low degree.
B: N = 200; clustered, regular.
C: N = 200; Non-clustered, approximately scale free.
D: N = 200; Non-clustered, regular.
Expected CC: The clustering coefficient of a randomly generated graph with the same connectivity.
**Incidence rates per 100 person years.
***Effective treatments per 100 person years.
Effects of different treatment protocols on scabies burden.
| Scenario 1 | Max. Rx density | |||
| 1 | 4 | 12 | 36 | |
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Shown in the first row of each box are results for all age groups, while the second row of each box shows results for the 0–10 year age group. The first row within each box shows the prevalence (boldface) and incidence rates of scabies (per 100 person-years), in addition to the total effective treatment rate (per 100 person years) and the total treatment count over 360 days. The second row within each box shows the prevalence and incidence rates in the 0–10 age group (per 100 person-years), and the treatment rate (per 100 person-years). Entries for each box are averages generated from the results of 24 one-year simulations.
Figure 5Scabies clustering.
Typical example from scenario 1 of a 200-node network at equilibrium showing affected individuals (red disks) in the context of community structure. Note how scabies occurs in clusters.
Figure 6Prevalence and incidence rates for scenario 1 (a, b) and 2 (c, d).
Effects on prevalence and incidence rates per 100 child-years (solid and dashed lines, respectively) of scabies in the 0–10 year-old age group as a function of the natural logarithm of the transmissibility Q (a, c), and as a function of the natural logarithm of the likelihood of importation J (b, d). For convenience, baseline transmissibility and the probability of importation are rescaled to the value 1 hence their log values are zero. Each point is the average of 24 one-year simulations.
Figure 7The effect of treatment partitioning on scabies burden.
Contour plot (a) (with lighter shades corresponding to larger values) of the maximal possible increase in scabies burden as a function of r and T. While the global maximum is constant, this maximum is only satisfied for particular choices of r and T. In (b) we run scenario 2 without treatment from N = 0 at t = 0 until N ∼ N (blue line). The mean field approximation is given by the red curve with rescaled parameter values N = 0.98 and r = 0.0037 (see equation 1, Box 1). In (c), we plot scabies prevalence for our mean field model as a function of the partitioning p, where the p are given by 1, 2, 6, 18 and 60. Note scabies prevalence asymptotes to the horizontal line corresponding to the calculated limit as p approaches infinity.