Literature DB >> 21281991

An application of two MIFs-based tools (Volsurf+ and Pentacle) to binary QSAR: the case of a palinurin-related data set of non-ATP competitive glycogen synthase kinase 3β (GSK-3β) inhibitors.

Giuseppe Ermondi1, Giulia Caron, Isela Garcia Pintos, Michela Gerbaldo, Manuel Pérez, Daniel I Pérez, Zoila Gándara, Ana Martínez, Generosa Gómez, Yagamare Fall.   

Abstract

VolSurf+ and GRIND descriptors extract the information present in MIFs calculated by GRID: the first are simpler to interpret and generally applied to ADME-Tox topics, whereas the latter are more sophisticated and thus more suited for pharmacodynamics events. Here we present a study which compares binary QSAR models obtained with VolSurf+ descriptors and GRIND for a data set of non-ATP competitive GSK-3β inhibitors chemically related to palinurin for which the biological activity is expressed in binary format. Results suggest not only that the simpler Volsurf+ descriptors are good enough to predict and chemically interpret the investigated phenomenon but also a bioactive conformation of palinurin which may guide future design of ATP non-competitive GSK-3 inhibitors.
Copyright © 2011 Elsevier Masson SAS. All rights reserved.

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Year:  2011        PMID: 21281991     DOI: 10.1016/j.ejmech.2010.12.024

Source DB:  PubMed          Journal:  Eur J Med Chem        ISSN: 0223-5234            Impact factor:   6.514


  5 in total

1.  Glycogen synthase kinase 3 inhibitors in the next horizon for Alzheimer's disease treatment.

Authors:  Ana Martinez; Carmen Gil; Daniel I Perez
Journal:  Int J Alzheimers Dis       Date:  2011-06-30

2.  GSK-3 Inhibitors: Preclinical and Clinical Focus on CNS.

Authors:  Hagit Eldar-Finkelman; Ana Martinez
Journal:  Front Mol Neurosci       Date:  2011-10-31       Impact factor: 5.639

3.  In Silico Prediction of the Dissociation Rate Constants of Small Chemical Ligands by 3D-Grid-Based VolSurf Method.

Authors:  Shuheng Huang; Linxin Chen; Hu Mei; Duo Zhang; Tingting Shi; Zuyin Kuang; Yu Heng; Lei Xu; Xianchao Pan
Journal:  Int J Mol Sci       Date:  2020-04-02       Impact factor: 5.923

4.  Alignment independent 3D-QSAR studies and molecular dynamics simulations for the identification of potent and selective S1P1 receptor agonists.

Authors:  Ali Akbar Alizadeh; Behzad Jafari; Siavoush Dastmalchi
Journal:  J Mol Graph Model       Date:  2019-09-29       Impact factor: 2.518

5.  Novel coumarins active against Trypanosoma cruzi and toxicity assessment using the animal model Caenorhabditis elegans.

Authors:  Fabiana Gomes Nascimento Soares; Gabriela Göethel; Luciano Porto Kagami; Gustavo Machado das Neves; Elisa Sauer; Estefania Birriel; Javier Varela; Itamar Luís Gonçalves; Gilsane Von Poser; Mercedes González; Daniel Fábio Kawano; Fávero Reisdorfer Paula; Eduardo Borges de Melo; Solange Cristina Garcia; Hugo Cerecetto; Vera Lucia Eifler-Lima
Journal:  BMC Pharmacol Toxicol       Date:  2019-12-19       Impact factor: 2.483

  5 in total

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