Literature DB >> 21280654

Electronically excited states of vitamin B12: benchmark calculations including time-dependent density functional theory and correlated ab initio methods.

Karina Kornobis1, Neeraj Kumar, Bryan M Wong, Piotr Lodowski, Maria Jaworska, Tadeusz Andruniów, Kenneth Ruud, Pawel M Kozlowski.   

Abstract

Time-dependent density functional theory (TD-DFT) and correlated ab initio methods have been applied to explore the electronically excited states of vitamin B(12) (cyanocobalamin or CNCbl). Different experimental techniques have been used to probe the excited states of CNCbl, revealing many issues that remain poorly understood from an electronic structure point of view. Due to its efficient scaling with size, TD-DFT emerges as one of the most practical tools that can be used to study the electronic properties of these fairly complex molecules. However, the description of excited states is strongly dependent on the type of functional used in the calculations. In the present contribution, the choice of a proper functional for vitamin B(12) was evaluated in terms of its agreement with both experimental results and correlated ab initio calculations. Three different functionals, i.e., B3LYP, BP86, and LC-BLYP, were tested. In addition, the effect of the relative contributions of DFT and HF to the exchange-correlation functional was investigated as a function of the range-separation parameter, μ. The issues related to the underestimation of charge-transfer excitation energies by TD-DFT were validated by the Λ diagnostic, which measures the spatial overlap between occupied and virtual orbitals involved in the particular excitation. The nature of the low-lying excited states was also analyzed based on a comparison of TD-DFT and ab initio results. Based on an extensive comparison with experimental results and ab initio benchmark calculations, the BP86 functional was found to be the most appropriate in describing the electronic properties of CNCbl. Finally, an analysis of electronic transitions and reassignment of some excitations were discussed.

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Year:  2011        PMID: 21280654     DOI: 10.1021/jp110914y

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  6 in total

1.  Theoretical modeling of low-energy electronic absorption bands in reduced cobaloximes.

Authors:  Anirban Bhattacharjee; Murielle Chavarot-Kerlidou; Jillian L Dempsey; Harry B Gray; Etsuko Fujita; James T Muckerman; Marc Fontecave; Vincent Artero; Guilherme M Arantes; Martin J Field
Journal:  Chemphyschem       Date:  2014-08-11       Impact factor: 3.102

2.  Electronic Properties of Vinylene-Linked Heterocyclic Conducting Polymers: Predictive Design and Rational Guidance from DFT Calculations.

Authors:  Bryan M Wong; Joseph G Cordaro
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2011-07-13       Impact factor: 4.126

3.  TD-DFT insight into photodissociation of the Co-C bond in coenzyme B12.

Authors:  Hui Liu; Karina Kornobis; Piotr Lodowski; Maria Jaworska; Pawel M Kozlowski
Journal:  Front Chem       Date:  2014-02-05       Impact factor: 5.221

4.  Nonempirically Tuned Range-Separated DFT Accurately Predicts Both Fundamental and Excitation Gaps in DNA and RNA Nucleobases.

Authors:  Michael E Foster; Bryan M Wong
Journal:  J Chem Theory Comput       Date:  2012-07-02       Impact factor: 6.006

5.  Role of the CarH photoreceptor protein environment in the modulation of cobalamin photochemistry.

Authors:  Courtney L Cooper; Naftali Panitz; Travyse A Edwards; Puja Goyal
Journal:  Biophys J       Date:  2021-07-24       Impact factor: 3.699

6.  Electron Transport in a Dioxygenase-Ferredoxin Complex: Long Range Charge Coupling between the Rieske and Non-Heme Iron Center.

Authors:  Wayne K Dawson; Ryota Jono; Tohru Terada; Kentaro Shimizu
Journal:  PLoS One       Date:  2016-09-22       Impact factor: 3.240

  6 in total

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