Literature DB >> 21278909

DYNAMICS OF SINGLE-MOLECULE ROTATIONS ON SURFACES DEPEND ON SYMMETRY, INTERACTIONS AND MOLECULAR SIZES.

Alexey Akimov1, Anatoly B Kolomeisky.   

Abstract

Rotating surface-mounted molecules have attracted attention of many research groups as a way to develop new nanoscale devices and materials. However, mechanisms of motion of these rotors at the single-molecule level are still not well understood. Theoretical and experimental studies on thioether molecular rotors on gold surfaces suggest that the size of the molecules, their flexibility and steric repulsions with the surface are important for dynamics of the system. A complex combination of these factors leads to the observation that the rotation speeds have not been hindered by increasing the length of the alkyl chains. However, experiments on diferrocene derivatives indicated that a significant increase in the rotational barriers for longer molecules. We present here a comprehensive theoretical study that combines molecular dynamics simulations and simple models to investigate what factors influence single-molecule rotations on the surfaces. Our results suggest that rotational dynamics is determined by the size and by the symmetry of the molecules and surfaces, and by interactions with surfaces. Our theoretical predictions are in excellent agreement with current experimental observations.

Entities:  

Year:  2011        PMID: 21278909      PMCID: PMC3026388          DOI: 10.1021/jp108062p

Source DB:  PubMed          Journal:  J Phys Chem C Nanomater Interfaces        ISSN: 1932-7447            Impact factor:   4.126


  34 in total

1.  Molecular machines.

Authors:  J F Stoddart
Journal:  Acc Chem Res       Date:  2001-06       Impact factor: 22.384

2.  Surface-mounted altitudinal molecular rotors in alternating electric field: single-molecule parametric oscillator molecular dynamics.

Authors:  Dominik Horinek; Josef Michl
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-26       Impact factor: 11.205

3.  Design principles for Brownian molecular machines: how to swim in molasses and walk in a hurricane.

Authors:  R Dean Astumian
Journal:  Phys Chem Chem Phys       Date:  2007-08-28       Impact factor: 3.676

4.  Micrometer-scale translation and monitoring of individual nanocars on glass.

Authors:  Saumyakanti Khatua; Jason M Guerrero; Kevin Claytor; Guillaume Vives; Anatoly B Kolomeisky; James M Tour; Stephan Link
Journal:  ACS Nano       Date:  2009-02-24       Impact factor: 15.881

Review 5.  Molecular rotors and motors: recent advances and future challenges.

Authors:  Josef Michl; E Charles H Sykes
Journal:  ACS Nano       Date:  2009-05-26       Impact factor: 15.881

6.  Molecular rotors: design, synthesis, structural analysis, and silver complex of new [7.7]cyclophanes.

Authors:  Niculina Bogdan; Ion Grosu; Guillaume Benoît; Loïc Toupet; Yvan Ramondenc; Eric Condamine; Ioan Silaghi-Dumitrescu; Gérard Plé
Journal:  Org Lett       Date:  2006-06-08       Impact factor: 6.005

7.  Progress toward a rationally designed, chemically powered rotary molecular motor.

Authors:  T Ross Kelly; Xiaolu Cai; Fehmi Damkaci; Sreeletha B Panicker; Bin Tu; Simon M Bushell; Ivan Cornella; Matthew J Piggott; Richard Salives; Marta Cavero; Yajun Zhao; Serge Jasmin
Journal:  J Am Chem Soc       Date:  2007-01-17       Impact factor: 15.419

Review 8.  Cyclodextrin-based molecular machines.

Authors:  A Harada
Journal:  Acc Chem Res       Date:  2001-06       Impact factor: 22.384

9.  A quantitative single-molecule study of thioether molecular rotors.

Authors:  Ashleigh E Baber; Heather L Tierney; E Charles H Sykes
Journal:  ACS Nano       Date:  2008-11-25       Impact factor: 15.881

10.  Phospholipid-bound molecular rotors: synthesis and characterization.

Authors:  Mark A Haidekker; Thomas Brady; Ke Wen; Cliff Okada; Hazel Y Stevens; Jeniffer M Snell; John A Frangos; Emmanuel A Theodorakis
Journal:  Bioorg Med Chem       Date:  2002-11       Impact factor: 3.641

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  1 in total

Review 1.  Motor proteins and molecular motors: how to operate machines at the nanoscale.

Authors:  Anatoly B Kolomeisky
Journal:  J Phys Condens Matter       Date:  2013-10-07       Impact factor: 2.333

  1 in total

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