Literature DB >> 21271685

NMR-based structural glycomics for high-throughput screening of carbohydrate-active enzyme specificity.

Romain Irague, Stéphane Massou, Claire Moulis, Olivier Saurel, Alain Milon, Pierre Monsan, Magali Remaud-Siméon, Jean-Charles Portais, Gabrielle Potocki-Véronèse.   

Abstract

We report here the development of a straightforward, sensitive, and quantitative NMR-based method for high-throughput characterization of carbohydrate structure and screening of carbohydrate active enzyme (CAZyme) specificity. Automated assays starting from gene library expression to carbohydrate structure determination directly from crude reaction media have been established and successfully used to screen a library of 4032 CAZymes obtained by combinatorial engineering, at a rate of 480 enzyme variants per day. This allowed one to accurately discriminate 303 enzyme variants with altered specificity. The results demonstrate the potential of high-throughput NMR technology in glycomics, to mine artificial and natural enzyme diversity for novel biocatalysts.

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Year:  2011        PMID: 21271685     DOI: 10.1021/ac1032148

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  9 in total

1.  Characterization of the First α-(1→3) Branching Sucrases of the GH70 Family.

Authors:  Marlène Vuillemin; Marion Claverie; Yoann Brison; Etienne Séverac; Pauline Bondy; Sandrine Morel; Pierre Monsan; Claire Moulis; Magali Remaud-Siméon
Journal:  J Biol Chem       Date:  2016-01-13       Impact factor: 5.157

2.  Characterization of the Functional Roles of Amino Acid Residues in Acceptor-binding Subsite +1 in the Active Site of the Glucansucrase GTF180 from Lactobacillus reuteri 180.

Authors:  Xiangfeng Meng; Tjaard Pijning; Justyna M Dobruchowska; Gerrit J Gerwig; Lubbert Dijkhuizen
Journal:  J Biol Chem       Date:  2015-10-27       Impact factor: 5.157

3.  4,6-α-Glucanotransferase activity occurs more widespread in Lactobacillus strains and constitutes a separate GH70 subfamily.

Authors:  Hans Leemhuis; Willem P Dijkman; Justyna M Dobruchowska; Tjaard Pijning; Pieter Grijpstra; Slavko Kralj; Johannis P Kamerling; Lubbert Dijkhuizen
Journal:  Appl Microbiol Biotechnol       Date:  2012-02-25       Impact factor: 4.813

4.  Combinatorial engineering of dextransucrase specificity.

Authors:  Romain Irague; Laurence Tarquis; Isabelle André; Claire Moulis; Sandrine Morel; Pierre Monsan; Gabrielle Potocki-Véronèse; Magali Remaud-Siméon
Journal:  PLoS One       Date:  2013-10-18       Impact factor: 3.240

Review 5.  Structure-function relationships of family GH70 glucansucrase and 4,6-α-glucanotransferase enzymes, and their evolutionary relationships with family GH13 enzymes.

Authors:  Xiangfeng Meng; Joana Gangoiti; Yuxiang Bai; Tjaard Pijning; Sander S Van Leeuwen; Lubbert Dijkhuizen
Journal:  Cell Mol Life Sci       Date:  2016-05-07       Impact factor: 9.261

Review 6.  Glycosylation of extracellular vesicles: current knowledge, tools and clinical perspectives.

Authors:  Charles Williams; Felix Royo; Oier Aizpurua-Olaizola; Raquel Pazos; Geert-Jan Boons; Niels-Christian Reichardt; Juan M Falcon-Perez
Journal:  J Extracell Vesicles       Date:  2018-03-04

7.  Escherichia coli metabolism under short-term repetitive substrate dynamics: adaptation and trade-offs.

Authors:  Eleni Vasilakou; Mark C M van Loosdrecht; S Aljoscha Wahl
Journal:  Microb Cell Fact       Date:  2020-05-29       Impact factor: 5.328

Review 8.  Discovery and Biotechnological Exploitation of Glycoside-Phosphorylases.

Authors:  Ao Li; Mounir Benkoulouche; Simon Ladeveze; Julien Durand; Gianluca Cioci; Elisabeth Laville; Gabrielle Potocki-Veronese
Journal:  Int J Mol Sci       Date:  2022-03-11       Impact factor: 5.923

9.  The C-Terminal Domain of Liquorilactobacillus nagelii Dextransucrase Mediates the Production of Larger Dextrans Compared to Liquorilactobacillus hordei.

Authors:  Julia Bechtner; Verena Hassler; Daniel Wefers; Matthias Ehrmann; Frank Jakob
Journal:  Gels       Date:  2022-03-09
  9 in total

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