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Literature DB >> 21266344

RADSeq: next-generation population genetics.

John W Davey¹, John L Davey, Mark L Blaxter, Mark W Blaxter.

Abstract

Next-generation sequencing technologies are making a substantial impact on many areas of biology, including the analysis of genetic diversity in populations. However, genome-scale population genetic studies have been accessible only to well-funded model systems. Restriction-site associated DNA sequencing, a method that samples at reduced complexity across target genomes, promises to deliver high resolution population genomic data-thousands of sequenced markers across many individuals-for any organism at reasonable costs. It has found application in wild populations and non-traditional study species, and promises to become an important technology for ecological population genomics.

Entities: Chemical

Mesh：

Year: 2010 PMID： 21266344 PMCID： PMC3080771 DOI： 10.1093/bfgp/elq031

Source DB: PubMed Journal: Brief Funct Genomics ISSN： 2041-2649 Impact factor: 4.241

13 in total

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Review 2. Assembly algorithms for next-generation sequencing data.

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4. The Sequence Alignment/Map format and SAMtools.

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5. Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags.

Authors: Paul A Hohenlohe; Susan Bassham; Paul D Etter; Nicholas Stiffler; Eric A Johnson; William A Cresko
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8. Fast and accurate short read alignment with Burrows-Wheeler transform.

Authors: Heng Li; Richard Durbin
Journal: Bioinformatics Date: 2009-05-18 Impact factor: 6.937

9. Evaluation of next generation sequencing platforms for population targeted sequencing studies.

Authors: Olivier Harismendy; Pauline C Ng; Robert L Strausberg; Xiaoyun Wang; Timothy B Stockwell; Karen Y Beeson; Nicholas J Schork; Sarah S Murray; Eric J Topol; Samuel Levy; Kelly A Frazer
Journal: Genome Biol Date: 2009-03-27 Impact factor: 13.583

10. Accurate whole human genome sequencing using reversible terminator chemistry.

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Journal: Nature Date: 2008-11-06 Impact factor: 49.962

172 in total

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4. Extensive linkage disequilibrium and parallel adaptive divergence across threespine stickleback genomes.

Authors: Paul A Hohenlohe; Susan Bassham; Mark Currey; William A Cresko
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Review 5. Genome-wide genetic marker discovery and genotyping using next-generation sequencing.

Authors: John W Davey; Paul A Hohenlohe; Paul D Etter; Jason Q Boone; Julian M Catchen; Mark L Blaxter
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6. Titration-free 454 sequencing using Y adapters.

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7. Optimization of multiplexed RADseq libraries using low-cost adaptors.

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Review 9. Population-level genetic variation and climate change in a biodiversity hotspot.

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10. The population structure and recent colonization history of Oregon threespine stickleback determined using restriction-site associated DNA-sequencing.

Authors: Julian Catchen; Susan Bassham; Taylor Wilson; Mark Currey; Conor O'Brien; Quick Yeates; William A Cresko
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