Literature DB >> 21258383

Cis-dicarbonyl binding at cobalt and iron porphyrins with saddle-shape conformation.

Knud Seufert1, Marie-Laure Bocquet, Willi Auwärter, Alexander Weber-Bargioni, Joachim Reichert, Nicolás Lorente, Johannes V Barth.   

Abstract

Diatomic molecules attached to complexed iron or cobalt centres are important in many biological processes. In natural systems, metallotetrapyrrole units carry respiratory gases or provide sensing and catalytic functions. Conceiving synthetic model systems strongly helps to determine the pertinent chemical foundations for such processes, with recent work highlighting the importance of the prosthetic groups' conformational flexibility as an intricate variable affecting their functional properties. Here, we present simple model systems to investigate, at the single molecule level, the interaction of carbon monoxide with saddle-shaped iron- and cobalt-porphyrin conformers, which have been stabilized as two-dimensional arrays on well-defined surfaces. Using scanning tunnelling microscopy we identified a novel bonding scheme expressed in tilted monocarbonyl and cis-dicarbonyl configurations at the functional metal-macrocycle unit. Modelling with density functional theory revealed that the weakly bonded diatomic carbonyl adduct can effectively bridge specific pyrrole groups with the metal atom as a result of the pronounced saddle-shape conformation of the porphyrin cage.

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Year:  2011        PMID: 21258383     DOI: 10.1038/nchem.956

Source DB:  PubMed          Journal:  Nat Chem        ISSN: 1755-4330            Impact factor:   24.427


  18 in total

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Journal:  J Biol Inorg Chem       Date:  1999-02       Impact factor: 3.358

2.  A steric mechanism for inhibition of CO binding to heme proteins.

Authors:  G S Kachalova; A N Popov; H D Bartunik
Journal:  Science       Date:  1999-04-16       Impact factor: 47.728

Review 3.  Functional analogues of cytochrome c oxidase, myoglobin, and hemoglobin.

Authors:  James P Collman; Roman Boulatov; Christopher J Sunderland; Lei Fu
Journal:  Chem Rev       Date:  2004-02       Impact factor: 60.622

4.  Conformational adaptation in supramolecular assembly on surfaces.

Authors:  Florian Klappenberger; Marta Esther Cañas-Ventura; Sylvain Clair; Stéphane Pons; Uta Schlickum; Zhi-Rong Qu; Harald Brune; Klaus Kern; Thomas Strunskus; Christof Wöll; Alessio Comisso; Alessandro De Vita; Mario Ruben; Johannes V Barth
Journal:  Chemphyschem       Date:  2007-08-24       Impact factor: 3.102

5.  Metalloporphyrin-NO bonding: building bridges with organometallic chemistry.

Authors:  Abhik Ghosh
Journal:  Acc Chem Res       Date:  2005-12       Impact factor: 22.384

Review 6.  CO as a cellular signaling molecule.

Authors:  Hong Pyo Kim; Stefan W Ryter; Augustine M K Choi
Journal:  Annu Rev Pharmacol Toxicol       Date:  2006       Impact factor: 13.820

7.  Controlled metalation of self-assembled porphyrin nanoarrays in two dimensions.

Authors:  Willi Auwärter; Alexander Weber-Bargioni; Susan Brink; Andreas Riemann; Agustin Schiffrin; Mario Ruben; Johannes V Barth
Journal:  Chemphyschem       Date:  2007-02-02       Impact factor: 3.102

8.  Reducing the molecule-substrate coupling in C60-based nanostructures by molecular interactions.

Authors:  K J Franke; G Schulze; N Henningsen; I Fernández-Torrente; J I Pascual; S Zarwell; K Rück-Braun; M Cobian; N Lorente
Journal:  Phys Rev Lett       Date:  2008-01-24       Impact factor: 9.161

9.  Stereochemistry of hemes and other metalloporphyrins.

Authors:  J L Hoard
Journal:  Science       Date:  1971-12-24       Impact factor: 47.728

Review 10.  Biochemical and biophysical properties of the CO-sensing transcriptional activator CooA.

Authors:  Shigetoshi Aono
Journal:  Acc Chem Res       Date:  2003-11       Impact factor: 22.384

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  8 in total

Review 1.  Porphyrins at interfaces.

Authors:  Willi Auwärter; David Écija; Florian Klappenberger; Johannes V Barth
Journal:  Nat Chem       Date:  2015-02       Impact factor: 24.427

2.  A surface-anchored molecular four-level conductance switch based on single proton transfer.

Authors:  Willi Auwärter; Knud Seufert; Felix Bischoff; David Ecija; Saranyan Vijayaraghavan; Sushobhan Joshi; Florian Klappenberger; Niveditha Samudrala; Johannes V Barth
Journal:  Nat Nanotechnol       Date:  2011-12-11       Impact factor: 39.213

3.  Deletion of the Desulfovibrio vulgaris carbon monoxide sensor invokes global changes in transcription.

Authors:  Lara Rajeev; Kristina L Hillesland; Grant M Zane; Aifen Zhou; Marcin P Joachimiak; Zhili He; Jizhong Zhou; Adam P Arkin; Judy D Wall; David A Stahl
Journal:  J Bacteriol       Date:  2012-08-17       Impact factor: 3.490

4.  n and p type character of single molecule diodes.

Authors:  Vinícius Claudio Zoldan; Ricardo Faccio; André Avelino Pasa
Journal:  Sci Rep       Date:  2015-02-10       Impact factor: 4.379

5.  Adsorption of iron tetraphenylporphyrin on (111) surfaces of coinage metals: a density functional theory study.

Authors:  Hao Tang; Nathalie Tarrat; Véronique Langlais; Yongfeng Wang
Journal:  Beilstein J Nanotechnol       Date:  2017-11-23       Impact factor: 3.649

6.  On-surface synthesis of singly and doubly porphyrin-capped graphene nanoribbon segments.

Authors:  Luis M Mateo; Qiang Sun; Kristjan Eimre; Carlo A Pignedoli; Tomas Torres; Roman Fasel; Giovanni Bottari
Journal:  Chem Sci       Date:  2020-10-26       Impact factor: 9.825

7.  Probing nitrosyl ligation of surface-confined metalloporphyrins by inelastic electron tunneling spectroscopy.

Authors:  Shiri R Burema; Knud Seufert; Willi Auwärter; Johannes V Barth; Marie-Laure Bocquet
Journal:  ACS Nano       Date:  2013-06-05       Impact factor: 15.881

8.  Coral-like Co3O4 Decorated N-doped Carbon Particles as active Materials for Oxygen Reduction Reaction and Supercapacitor.

Authors:  Zhichao Lin; Xiuwen Qiao
Journal:  Sci Rep       Date:  2018-01-29       Impact factor: 4.379

  8 in total

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