Literature DB >> 2125820

Multiple replacements establish the importance of tyrosine-503 in beta-galactosidase (Escherichia coli).

M Ring1, R E Huber.   

Abstract

Tyr-503 of beta-galactosidase was specifically replaced with Phe, His, Cys, and Lys using site-directed mutagenesis. The normal enzyme and the substituted enzymes were purified. The activities of each of the substituted enzymes with o-nitrophenyl-beta-D-galactopyranoside (ONPG) and p-nitrophenyl-beta-D-galactopyronoside (PNPG) were very low and Y503K-beta-galactosidase was essentially inactive, showing that Tyr-503 is important for activity. The stability (including tetrameric stability) of the enzymes at 4 and 25 degrees C was essentially the same as that of the wild-type enzyme and the cleavage patterns on sodium dodecyl sulfate gels after protease action were unchanged. These studies thus indicate that Tyr-503 has no noticeable influence on stability under normal conditions. The substitutions for Tyr-503 had some small effects on the binding of both substrate and inhibitor. However, both kappa 2 (glycosidic bond cleavage rate) and kappa 3 (hydrolysis rate constant) were dramatically reduced. Each substitution except that of Lys (which can be explained by electrostatic effects) gave decreases in kappa 2 and kappa 3 of roughly the same magnitude regardless of whether the substitutions were conservative or not. This strongly implies that the changes in rate were not due to conformational changes as it is very unlikely that there would be such similar decreases in the values of kappa 2 and kappa 3 for amino acids with such different structures and chemical properties if the changes in rate were due to conformational differences. The data suggest that one possible role of Tyr-503 is as a general acid/base catalyst. Profiles of the kinetic data of the enzymes as functions of pH supported the suggestion that Tyr-503 normally acts as a general acid and base catalyst. When Tyr-503 was substituted by His, a small amount of base catalytic activity seemed to be restored. The strongest evidence that Tyr-503 acts as an acid catalyst came from studies with isoquinolinium-beta-D-galactopyranoside as the substrate. The kappa cat(s) of Y503F-beta-galactosidase and of Y503C-beta-galactosidase decreased by about an order of magnitude while the rate decreases were about 3 orders of magnitude with ONPG and PNPG. The breakdown of isoquinolinium-beta-D-galactopyranoside cannot be catalyzed by acids.

Entities:  

Mesh:

Substances:

Year:  1990        PMID: 2125820     DOI: 10.1016/0003-9861(90)90652-f

Source DB:  PubMed          Journal:  Arch Biochem Biophys        ISSN: 0003-9861            Impact factor:   4.013


  8 in total

1.  Disulfide bond formation and activation of Escherichia coli β-galactosidase under oxidizing conditions.

Authors:  Joaquin Seras-Franzoso; Roman Affentranger; Mario Ferrer-Navarro; Xavier Daura; Antonio Villaverde; Elena García-Fruitós
Journal:  Appl Environ Microbiol       Date:  2012-01-27       Impact factor: 4.792

2.  Directed evolution of a fucosidase from a galactosidase by DNA shuffling and screening.

Authors:  J H Zhang; G Dawes; W P Stemmer
Journal:  Proc Natl Acad Sci U S A       Date:  1997-04-29       Impact factor: 11.205

3.  Optimizing lactose hydrolysis by computer-guided modification of the catalytic site of a wild-type enzyme.

Authors:  Yi-Ning Dong; Ling Wang; Qiong Gu; Haiqin Chen; Xiaoming Liu; Yuanda Song; Wei Chen; Arnold T Hagler; Hao Zhang; Jun Xu
Journal:  Mol Divers       Date:  2013-04-13       Impact factor: 2.943

4.  Lack of tRNA modification isopentenyl-A37 alters mRNA decoding and causes metabolic deficiencies in fission yeast.

Authors:  Tek N Lamichhane; Nathan H Blewett; Amanda K Crawford; Vera A Cherkasova; James R Iben; Thomas J Begley; Philip J Farabaugh; Richard J Maraia
Journal:  Mol Cell Biol       Date:  2013-05-28       Impact factor: 4.272

5.  Stereochemical course and structure of the products of the enzymic action of endo-1,3-1,4-beta-D-glucan 4-glucanohydrolase from Bacillus licheniformis.

Authors:  C Malet; J Jiménez-Barbero; M Bernabé; C Brosa; A Planas
Journal:  Biochem J       Date:  1993-12-15       Impact factor: 3.857

6.  The crystal structure of galacto-N-biose/lacto-N-biose I phosphorylase: a large deformation of a TIM barrel scaffold.

Authors:  Masafumi Hidaka; Mamoru Nishimoto; Motomitsu Kitaoka; Takayoshi Wakagi; Hirofumi Shoun; Shinya Fushinobu
Journal:  J Biol Chem       Date:  2009-01-05       Impact factor: 5.157

7.  Substitutions for Glu-537 of beta-galactosidase from Escherichia coli cause large decreases in catalytic activity.

Authors:  J Yuan; M Martinez-Bilbao; R E Huber
Journal:  Biochem J       Date:  1994-04-15       Impact factor: 3.857

8.  Rational design and rapid screening of antisense oligonucleotides for prokaryotic gene modulation.

Authors:  Yu Shao; Yan Wu; Chi Yu Chan; Kathleen McDonough; Ye Ding
Journal:  Nucleic Acids Res       Date:  2006-10-11       Impact factor: 16.971

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.